PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5t09A_

Fold library id	PDB Header	Molecule	Title
c5t09A_	2.01	PDB header: toxin	Chain: A: PDB Molecule: type iii secretion system effector hopba1;

Links to external resources
Added to library: Thu Feb 9 13:59:52 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I N P S I N V R P P R G G P V D T L V G A A S D N N L V Y I G D E H G K L F I P K L I T E S A A K L K N A G V D H L A V E F V K H S D G A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S
S
T T
T T T G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F R E A L S D G K S A V K H F L E A S W G R H G D A W L D K V S E A L C S A H R A G I Y V S G I D R K X A I D Q P K T P X Q K I L Y X K K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L A L N V A W D A A A T R E A S A V C A N K S I V W G G A G H F S N S K T D G P K D X R P G L V I S F D L T G R G S S R I N D A D E H S H I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S G G G G
S
T T T S S T T S
B S S S
S
S
S S
S

. . . . . . .

Sequence V I A G E D N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	N	P	S	I	N	V	R	P	P	R	G	G	P	V	D	T	L	V	G	A	A	S	D	N	N	L	V	Y	I	G	D	E	H	G	K	L	F	I	P	K	L	I	T	E	S	A	A	K	L	K	N	A	G	V	D	H	L	A	V	E	F	V	K	H	S	D	G	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S							S	S													S								T	T		T																T	T											G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	R	E	A	L	S	D	G	K	S	A	V	K	H	F	L	E	A	S	W	G	R	H	G	D	A	W	L	D	K	V	S	E	A	L	C	S	A	H	R	A	G	I	Y	V	S	G	I	D	R	K	X	A	I	D	Q	P	K	T	P	X	Q	K	I	L	Y	X	K	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					G	G	G																		T	T																	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	A	L	N	V	A	W	D	A	A	A	T	R	E	A	S	A	V	C	A	N	K	S	I	V	W	G	G	A	G	H	F	S	N	S	K	T	D	G	P	K	D	X	R	P	G	L	V	I	S	F	D	L	T	G	R	G	S	S	R	I	N	D	A	D	E	H	S	H	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T															T	T		S								G	G	G	G		S		T	T	T	S	S	T	T	S											B	S	S	S		S					S		S	S		S
	.	.	.	.	.	.	.
Sequence	V	I	A	G	E	D	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					B