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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5szmA_

Fold library idPDB HeaderMoleculeTitle
c5szmA_3.60PDB header: cell adhesionChain: A: PDB Molecule: pcdhga8 or protocadherin gamma a8;


Added to library: Thu Feb 9 14:55:15 2017
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence QIRYSVPEETDKGTVVGNISKDLGLEPRELAERGVRIVSRGRSQLFSLNPRGGSLVTAGRIDREELCAQS
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Known secondary structure (DSSP)
SS

TT

TTGGGTS
TT



SGGGGTTTT
S


TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence TPCLVNINILVEEKGKLFGVEIEITDINDNNPKFHVGDLEVKINEIAAPGARYPLPEAVDPDVGINSLQS
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Known secondary structure (DSSP) SSTTTT






SSSTT

TT




SS
GGGS
 .........150.........160.........170.........180.........190.........200.........210
Sequence YQLSPNRHFSLHLQTGDDGTINPELVLERTLDREEEPTHHLVLTASDGGEPRRSSTALIQITVLDTNDNA
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Known secondary structure (DSSP)


SS

SSSS

S


TTT
SSSSS









 .........220.........230.........240.........250.........260.........270.........280
Sequence PVFDQPVYRVKVLENVAPGTLLLTVRASDPDEGVNGKVTYKFRKINEKQSLLFHLHENTGEMTVAKNLDY
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Known secondary structure (DSSP)
S
STT

TT




S
GGGT

SSSS

TTT

S


T
 .........290.........300.........310.........320.........330.........340.........350
Sequence EECSLYEMEIQAEDVGALLGRSKVIIMVEDVNDNRPEVTITSLFNPVLENSLPGTVIAFLNVHDQDSGKN
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Known secondary structure (DSSP) TT
S
TT



S





TT

TT

SS
GGG
 .........360.........370.........380.........390.........400.........410......
Sequence GQVVCYTHDNLPFKLEKSIDNYYRLVTWKYLDREKVSTYNITVIASDLGAPPLSTETYIALTVADT
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Known secondary structure (DSSP) T


SSSS
SSS
S


TTT

SSSS




Download:PDB structure FASTA sequence

Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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