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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5svan_

Fold library idPDB HeaderMoleculeTitle
c5svan_15.30PDB header: transcription, transferase/dnaChain: N: PDB Molecule: mediator of rna polymerase ii transcription subunit 8;


Added to library: Thu Feb 9 20:31:16 2017
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence MVATVKRTIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFT
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Known secondary structure (DSSP)



TTS

GGG



TTS


TT

TTSSS
S

 .........80.........90.........100.........110.........120.........130.........140
Sequence DPPFRIEEQGWGGFPLDISVFLLEKAGERKIPHDLNFLQESYEVEHVIQIPLNKPLLTEELAKSGSTDLE
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Known secondary structure (DSSP) SSTT

SS


GGGT


TTSSS
STTT





 .........150.........160.........170.........180.........190.........200
Sequence KLAFGLTKLNEDDLVGVVQMVTDNKTPEMNVTNNVEEGEFIIDLYSLPEGLLKSLWDYVK
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Known secondary structure (DSSP) S
TSS
S


GGG



GGGS


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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