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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5oqm1_

Fold library idPDB HeaderMoleculeTitle
c5oqm1_5.80PDB header: transcriptionChain: 1: PDB Molecule: general transcription and dna repair factor iih subunit


Added to library: Sat May 12 09:30:04 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSHSGAAIFEKVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPASSEKMMLRLIGKVDESK
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Known secondary structure (DSSP)
TTTT
SSSS
SSSS
GGG

TTSS


S
S
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence KRKDNEGNEVVPKPQRHMFSFNNRTVMDNIKMTLQQIISRYKDADIYEEKRXXXXXXXXTNLKLQQSLLK
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Known secondary structure (DSSP) S


TTSS
SS



S



S
 .........150.........160.........170.........180.........190.........200.........210
Sequence GNKVLMKVFQETVINAGLPPSEFWSTRIPLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLSREKI
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Known secondary structure (DSSP)
TTT
S
T



SS

SSS


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence LNIFENYPIVKKAYTDNVPKNFKEPEFWARFFSSKLFRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)
SSSSS
SSSTT






S
 .........290.........300.........310.........320.........330.........340.........350
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)




SSSTTTS


SS







T


 .........360.........370.........380.........390.........400.........410.........420
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVKSTLPIDLLESCRMLHTTCCEFLKHFYIHF
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Known secondary structure (DSSP) S


GGGSS

STT



S

T
 .........430.........440.........450.........460.........470.........480.........490
Sequence QSGEQKQASTVKKLYNHLKDCIEKLNELFQDVLNGDGESMSNTCTAYLKPVLNSITLATHKYDEYFNEYN
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Known secondary structure (DSSP) TS



S
 .
Sequence N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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