Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5oqj2_

Fold library idPDB HeaderMoleculeTitle
c5oqj2_4.70PDB header: transcriptionChain: 2: PDB Molecule: rna polymerase ii transcription factor b subunit 2;


Added to library: Sat Apr 28 08:23:33 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DYSLKHSVTQYLEEIPQQVQNRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKL
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)
S


S

TT
SS

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence QFQNAIKSMKSLHLLIPNKSSGTLMINLNPTFKISLRNALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) TT
SSSS
SS








S
 .........150.........160.........170.........180.........190.........200.........210
Sequence XXXXXXXXXXXXXXXXXSEKVLNLLKHSKLMEEVNSTGEFKITNEGFQFLLQXXXXXXXXXXXXXXXXXX
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP) T
SS


S
TTSTTTT



T
 .........220.........230.........240.........250.........260.........270.........280
Sequence XXKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGLVFQKHSNDSIFYPTKLALMLTSDX
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) T

TTTT
TT


SST

TSTTT


 .........290.........300.........310.........320.........330.........340.........350
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPTVVDQIRLWQLELDRVITYEGSLYSDFE
Predicted secondary structure


















































SS confidence





































































Known secondary structure (DSSP) TT

TSS
S











S
 .........360.........370.........380.........390.....
Sequence TSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRK
Predicted secondary structure









SS confidence












































Known secondary structure (DSSP) STT
TTTTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D