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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5opjA_

Fold library idPDB HeaderMoleculeTitle
c5opjA_2.05PDB header: oxidoreductaseChain: A: PDB Molecule: rhamnogalacturonan lyase;


Added to library: Sat Mar 3 08:34:21 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HQVSYFSLQDVKLLSSPFLQAQQTDLHYILALDPDRLSAPFLREAGLTPKAPSYTNWENTGLDGHIGGHY
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Known secondary structure (DSSP)


B


GGG
SSS
TT


SS


SGGGTTT
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LSALSXXYAATGDTAIYHRLNYXLNELHRAQQAVGTGFIGGTPGSLQLWKEIKAGDIRAGGFSLNGKWVP
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Known secondary structure (DSSP)


SS



STTTT


B
SSTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LYNIHKTYAGLRDAYLYAHSDLARQXLIDLTDWXIDITSGLSDNQXQDXLRSEHGGLNETFADVAEITGD
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Known secondary structure (DSSP)

TT

TTS

TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KKYLKLARRFSHKVILDPLIKNEDRLNGXHANTQIPKVIGYKRVAEVSKNDKDWNHAAEWDHAARFFWNT
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Known secondary structure (DSSP) TTS
TT



TT
BTTT
TT


 .........290.........300.........310.........320.........330.........340.........350
Sequence VVNHRSVCIGGNSVREHFHPSDNFTSXLNDVQGPETCNTYNXLRLTKXLYQNSGDVDNSNKPDPRYVDYY
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Known secondary structure (DSSP) B
TTS
B
BTTB


TT


S


BTTSSSS

T
 .........360.........370.........380.........390.........400.........410.........420
Sequence ERALYNHILSSQEPDKGGFVYFTPXRPGHYRVYSQPETSXWCCVGSGLENHTKYGEFIYAHQQDTLYVNL
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Known secondary structure (DSSP) TTGGGB
TTT

BBSB


STTB


B

TTT


TT
GGGGSTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence FIPSQLNWKEQGVTLTQETLFPDDEKVTLRIDKAAKKNLTLXIRIPEWAYEITINGKKHLSDIQTGASTY
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Known secondary structure (DSSP)


GGGT
TTSSS




TT

TT


S
SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LPIRRKWKKGDXITFHLPXKVSLEQIPDKKDYYAFLYGPIVLATSTGTENLDGIYADDSRGGHIAHGRQT
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Known secondary structure (DSSP)

TT





TT

STT
S

TTSB

SSTTTTS

S


 .........570.........580.........590.........600.........610.........620.........630
Sequence PLQEIPXLIGNPDSIRHSLHKLSGSKLAFSYDGNVYPTQSLELIPFFRLHNSRYAVYFRQASEEQFKTIQ
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Known secondary structure (DSSP)
GGGS
S
T
SSSS


S
S


GGG

SSS
TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence EEXATAERKATELANRTVDLIFPGEQQPESDHSIQYEASETGTHKDRHFRRAKGWFSYNLKIKEEASQLX
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Known secondary structure (DSSP) TT
TT
TT
TTSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence ITVRQEDRNKAVILLNNEKLTVHPTVSKADKDGFIRLCYLLPRKLKVGSCEILFKPDGTEWTSAVYEVRL
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Known secondary structure (DSSP) TT



TT

S





TTS
SSSSSS


B
 ..
Sequence LK
Predicted secondary structure
SS confidence

Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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