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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5olqB_

Fold library idPDB HeaderMoleculeTitle
c5olqB_1.48PDB header: lyaseChain: B: PDB Molecule: rhamnogalacturonan lyase;


Added to library: Sat Dec 2 08:25:55 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GKTYYMDPEGSDSNPGTSDKPFATLVKVQEVVVAGDVVYINPGTYVVPANQVPMTTTNSGLYHCVFHMNK
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Known secondary structure (DSSP)


TT

TTS


SSS
BS


TT

S

TT


STTTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence SGEAGKPISYLANPNKQGRPIFDLSQVKPKDQRITVFYVTGSNLYLKGFDVIGTQVTITGHTQSECFRIV
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Known secondary structure (DSSP)

BTTB

TTSSS

TT


TT


SSS







SS



 .........150.........160.........170.........180.........190.........200.........210
Sequence KGANNNKFEDLRTHDGMAIGFYLLGGSNNHILNCDAYNNYDSVSEGGKGGNVDGFGGHINSSSVGEGKGT
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Known secondary structure (DSSP) TT
S
SSSS
S

BSSGGGG
B
S

S


GGG
STTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence GNVFEGCRAWYNSDDGFDLINCFEAVKIINCWSFLNGYKPGTKEVAGDGTGFKAGGYGMAADKLPAIPSV
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Known secondary structure (DSSP)

S
SS
S
TT
SS

S
STTB
TTS

B
S








SSS




SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence IPQHEVRNSLAYYNRLRGFYANHHLGGIIFESNTAVNSGENYNMTNRESPLALPPTDVNGYDHMVKNNLS
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Known secondary structure (DSSP)



S


SS
TTBSS

S
S
S


SS

SS

SB
S
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence LVTRSGSKHIVMVNRAKSEVSNNSFDGSEEVIETDFISLEEAELMRDRKPNGDLPDVNFGKLTTDAELRF
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Known secondary structure (DSSP)

STT
SB
TTTSS
GGGSSS


GGGBSB

GGGGGS


TTS





BT
B
S
 ......
Sequence WGMGCF
Predicted secondary structure





SS confidence





Known secondary structure (DSSP) TT
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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