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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5oklA_

Fold library idPDB HeaderMoleculeTitle
c5oklA_2.09PDB header: transport proteinChain: A: PDB Molecule: afamin;


Added to library: Sat Dec 9 08:26:01 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FNSTQKFIEDNIEYITIIAFAQYVQEATFEEMEKLVKDMVEYKDRCMADKTLPECSKLPNNVLQEKICAM
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Known secondary structure (DSSP)
T
TT

S
S
STGGGS
TS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EGLPQKHNFSHCCSKVDAQRRLCFFYNKKSDVGFLPPFPTLDESLLNHFLYEVARRNPFVFAPTLLTVAV
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Known secondary structure (DSSP) TTTT
TS


S

TTS







STTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence HFEEVAKSCCNKVNCLQTRAIPVTQYLKAFSSYQKHVCGALLKFGTKVVHFIYIAILSQKFPKIEFKELI
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Known secondary structure (DSSP) T


TTS

TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence SLVEDVSSNYDGCCEGDVVQCIRDTSKVMNHICSKQDSISSKIKECCEKKIPERGQCIINSNKDDRPKDL
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Known secondary structure (DSSP) T
TGGGT
TT
TS
TTS





TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence SLREGKFTDSENVCQERDADPDTFFAKFTFEYSRRHPDLSIPELLRIVQIYKDLLRNCCNTENPPGCYRY
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Known secondary structure (DSSP)
S

GGGTT
S

T
TTS
TTSS
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence AEDKFNETTEKSLKMVQQECKHFQNLGKDGLKYHYLIRLTKIAPQLSTEELVSLGEKMVTAFTTCCTLSE
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Known secondary structure (DSSP)
TTS
TTSTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence EFACVDNLADLVFGELCGVNENRTINPAVDHCCKTNFAFRRPCFESLKADKTYVPPPFSQDLFTFHADMC
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Known secondary structure (DSSP)
SSS


S

STTT



TT




GGGG


GGGS
 .........500.........510.........520.........530.........540.........550.........560
Sequence QSQNEELQRKTDRFLVNLVKLKHELTDEELQSLFTNFANVVDKCCKAESPEVCFNEESPKIGNKGENLYF
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Known secondary structure (DSSP) S


TTTS
TTSSSS


S
SS

S
 .
Sequence Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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