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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5oikZ_

Fold library idPDB HeaderMoleculeTitle
c5oikZ_3.70PDB header: transcriptionChain: Z: PDB Molecule: transcription elongation factor spt5;


Added to library: Sat Sep 16 08:37:02 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL
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Known secondary structure (DSSP)



TT
TTSSS






TT

SSSTT
GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence RLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDR
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Known secondary structure (DSSP) GGGSS



GGGTTGGG






S

TT
SSSTTTT

TTSS




TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence IKAPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFREHNF
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Known secondary structure (DSSP) S









SSTTTTTTTSTT
SS









 .........220.........230.........240.........250.........260.........270.........280
Sequence QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTG
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Known secondary structure (DSSP)
TT

SSTTTT




SSS

B
TT

SB

B
GGG



TTS
SSTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQV
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Known secondary structure (DSSP)
SS
SS



GGG







B
TTSS
BTT

SSS

SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence LNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLV
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Known secondary structure (DSSP) TTS
GGGS



TT

TTS
TT

SSTTTT
TT
TT

 .........430.........440.........450.........460.........470.........480........
Sequence ENGGMFVCKTRHLVLANELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVG
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Known secondary structure (DSSP) GGGGGGG


STT

SSTTTT


SSSSSS
TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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