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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5oejB_

Fold library idPDB HeaderMoleculeTitle
c5oejB_5.70PDB header: transcriptionChain: B: PDB Molecule: tra1 subunit within the chromatin modifying complex saga;


Added to library: Sat Aug 5 09:10:47 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HVVQLDDFATRLKAQSKHSVLSEICDSLETEYFLKSLIPLFIDPENKLRNITLEILHSNEIVDTLMDLLG
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Known secondary structure (DSSP)











GGGGT

 .........80.........90.........100.........110.........120.........130.........140
Sequence ILCMKAITTLHEKVHPFIDIVIEIYKQLAQAMFSFKTLAESSLGNFIPHVMKVLQAEARKAAEEKRANYG
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Known secondary structure (DSSP)
SGGGGGGGT


SSTT










 .........150.........160.........170.........180.........190.........200.........210
Sequence EFIIGQVKAASFLAYLFIFLEPYQQAIPDIIIRLLQPSELSAARKELLHATRHILSDFRKMFIPKIDLLF
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 .........220.........230.........240.........250.........260.........270.........280
Sequence TAYETLRPLAYSTVADFIHNVRDPAQLWKSVSIYCKNLALTVQIMSAKLLLNLIEKIMRSRQLLMVIIDA
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 .........290.........300.........310.........320.........330.........340.........350
Sequence YTKRFKMLNSRYNGIMKQHATYELLKDSRYLFKTLMTFLKTIMIGLKNSTKEEKDLMEIFATMFIHPASF
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Known secondary structure (DSSP)








 .........360.........370.........380.........390.........400.........410.........420
Sequence NEIVREELPFMYKQMLDFASLLHIPQFFLASVITSSSFSGILITFLKSKLVDIKSNILIRLFKLCFMSVE
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Known secondary structure (DSSP)
SS
SSTTTTT
SS
S





 .........430.........440.........450.........460.........470.........480.........490
Sequence SVILPHLNELILKSLKLSTTAKEPLVYFYLIRTLFRSIENLYKEIMPLLQVLLESLSKLIHEARRPQERD
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Known secondary structure (DSSP) TTS

S






TT




T
 .........500.........510.........520.........530.........540.........550.........560
Sequence IYVELCLTVPVVLVPHLSYLMKPLVYALNGSQESVSQGLRTLELCVDLTAEYFDPIIEPVIDDVMEALSK
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Known secondary structure (DSSP) TT

SSSS

S

S
ST
 .........570.........580.........590.........600.........610.........620.........630
Sequence HSHTTLRILGKLGGRNRTFIKPVDNLPGLSAAFSLLTDPRPRIHYRINSFKYISGIFQLFLGATQLPDDY
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Known secondary structure (DSSP)




SSTTTS

SS



S


SS



SS




STT
 .........640.........650.........660.........670.........680.........690.........700
Sequence ANRLKESMDIILEDTIAPDEPLNSQMELLVKLLESIFYAQEVREESKALIRGTCNHFILLYFNKMVIDKR
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Known secondary structure (DSSP)














T

S


SS
SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence KFVRKFSVDNLNENCIFDAIIYALSSSAVRSMGLESVQLIYDSCVPLNVMCSKFIEEPYHKKLAGCIGLE
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Known secondary structure (DSSP) S

















 .........780.........790.........800.........810.........820.........830.........840
Sequence MMLNSLNARQLEIIRALFCEVTNTAKRLILNSLKEWNNDVFSSVFQNLVSSLIVDLEIVRATAQEALRTL
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 .........850.........860.........870.........880.........890.........900.........910
Sequence SETPIATMISPCKHILLAPFQMQIGNIDAITFCMEELNRLVQEALALVSEQLVRLRVVCIQLLSLAIRSN
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 .........920.........930.........940.........950.........960.........970.........980
Sequence IRVKILVVFFKSLCEIIRAAHGGLKAVIPKELLQNGLRPMLMNLSDHLTVASLEALSGLLKLFISYFVGI
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Known secondary structure (DSSP)








T


S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence GSKLLDHLLAWAQPRTLQQSTVQIIVAILDVFHLAHKFMNDLMNALLYLENNLPFREPLAKFLDPDESFE
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Known secondary structure (DSSP)


T








 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence YFFNEFSEITTRFVYFVGLDSSLRAKVLESLPRVRGLLHCVRFSNLVDLCESLEELLGELLDAGVCLTLK
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 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence RSSNVFQVDQGFETLQLLYIEYFKSLGHEKVFNFIDKISKEGLFDDFIFNEKCQDIPTVQQTLDTIIRMT
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Known secondary structure (DSSP)










TTS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence PQVLDARVYLYKRIFLPICIYESEMHGLPAWLKSFDSDVWKRYRLELMQLTALKGAPTALTDMRKDIIKF
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Known secondary structure (DSSP) TT










 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence SWNYLDDNTSKQAAYVVTAYFISRTPSELTTRIFVALLRCHDTRYLVKQALELLAPVLSFYPARDHFIPN
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Known secondary structure (DSSP)








GGGG

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence IITAMGKLQQLAIDLAELILKWETKLPKSFAQREACVTFLIRYICENELGKRALNILYELLGVTVKLQFF
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Known secondary structure (DSSP)


STT







 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence ERFLMSLLGYCLNALEVLAVALTTWIIENVSYLQKLLEKCLNQDIQEILQKVLGIILEAINKEVTNFISL
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Known secondary structure (DSSP)


T







 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence IVNIIGEDLTSVAAGVSLCWTLSLYPNALDSLLPSIMRTFNKLCRDHIAISLQGNQPQSGDFANIEKVTT
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Known secondary structure (DSSP)





TT

SS
SSSTT


 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence NLLEKILNLCAARSLDDQRRVFLSLLAQLIDRSKDMLLKVINIVTEWIFKTDFTTKEKAGILGKMMIFDL
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 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence RPELSKKFNQVIVDIFESLAHTELTARMETAFLFGTSDVSIRKKLMSILSDSLEIDKRLFYIIKDQNWEY
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 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence LSPWLNQALQLLYGSFENTLSPLQSITEGLAREKSIIDFVAKHNEFLDSVAGDILNPLIDISAETIHNAW
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Known secondary structure (DSSP)





TT








 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence VVVFPVASRYELEFTRALVKLLFKDYHIPNVIKSLLDGVGKCPHLVKYLGSNYNAWYGAIKLLEELSEGQ
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Known secondary structure (DSSP) STT









TTSS
STSS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence GIDNQKISDANQDALLEVYMSLQEDDMFYGTWRRRAKYFETNAALSYEQIGIWDKALQLYEAAQIKARSG
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Known secondary structure (DSSP)
SSSTT

S
SS

TSSSS
TT
SSSST
SS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence VFPFGESEYSLWEDHWIYCAEKLQHWEILTELAKHEGFTDLLLECGWRGADWIADREPLEQSVKTVMDIP
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Known secondary structure (DSSP)



TSGGGTTSS
SSSS

SS
S
SS


S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence TPRRQIFQTFLALQGFSQQKDTLQDVSRLCDEGIQLTLRKWNALPQRVTRAHIGLLHTFQQYVELMEASQ
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Known secondary structure (DSSP) S

S



SSSTGGGGGGGG


SSST
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence VYSSLVTTNAQNLDVKSQELKRVLQAWRERLPNDINIWNDLVTWRQHVFGVINRVSYAYRGYHEMAWVIN
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Known secondary structure (DSSP) S
STTTTT
SSTTS


S
TT

TT
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence RFAHVARKVCINQLTKAFLKLREQAKCSELNTGLDVISATQQKAEFFTLKGMFLAKLNAKDEANQAFATA
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Known secondary structure (DSSP)











S
SS

SST
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence VQIDLNLPKAWAEWGFFNDRRFKENPEEIFHAKNAISCYLQAAGLYKDGKTRKLLCRILWLISLDDAAGS
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Known secondary structure (DSSP) SSSS

STS
SSGGGGGGS


TTS
SS
S
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence LAKTFEDHHGESPVWYWITFVPQLLTSLSHKEAKIVRHILIQIAKSYPQSLHFQLRTTKEDYQTTDSRQP
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Known secondary structure (DSSP) SSS

GGGTSS
GGGGT

SSS
SSTTSSSTT

 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence WQDVEEIMGILKTAYPLLALSLESLVDQLNQRFKCNADEDAYRLVIVLYNDGVQQMNRPAATEASISRFA
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Known secondary structure (DSSP) TTSSSSSTTSS




S



STS
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence DSVLPKNIREVFEQDIIACNPNLETYISKLRKWRDCLEEKLGKADLERVSLHLSLFHHQKFEDIEIPGQY
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Known secondary structure (DSSP) SS

TT

STTTT

STTTT

TTTTT
S


SSS
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence LLHKDNNNHFIKIERFLPTLDLVRGSNGCYKRMTIRGNDGSLHPFAVQFPAARHCRREERIFQLFRIFDD
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Known secondary structure (DSSP)
SSTT
SS








SBSS

SS
BB



TTT




BTT

SST
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence ALSRKVQSRRRNISLTLPIAVPLSPHIRILNDDKRYTTLMGIYEEFCRRKGQSRDEPFAYTIQKLRAAFD
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Known secondary structure (DSSP) TTS
SSTTS





B

TTT

B


SS



S
SSS
SS
TSS
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence PRLPKPDIVSVRAEVLASIQSTLVPSTLLKDYYTEKFSNYENYWLFRKQFTAQYASFIFMTYIMCINSRQ
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Known secondary structure (DSSP) SS
SS




TTTT
SSSS

SS
SS



S
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence PQKIHINEGSGNIWTSTAYNNSTLDPAVKAGAPIFYNTESVPFRLTPNIQKFIGEAGLEGILSVYILVIA
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Known secondary structure (DSSP) SSSS


SSS

S









SS

SS








S




S

SSTTTSSBTTBTS
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence NSLSDSEFDMEQYLSLFVRDEVISWFAQQHRASAQTNQLREIVRVNVELLTKRVLQLNHIPNSQNVATQF
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Known secondary structure (DSSP) SSSSS


SSSS
SS
TTS

SSS

STS

S

SSS

S
SS
 .........2810.........2820.....
Sequence VLNLISQAVNPRNLAYTDSAWMAYL
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Known secondary structure (DSSP) TTSSSS

SSTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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