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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5o9gW_

Fold library idPDB HeaderMoleculeTitle
c5o9gW_4.80PDB header: dna binding proteinChain: W: PDB Molecule: chromo domain-containing protein 1;


Added to library: Sat Oct 14 09:21:01 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DFHGIDIVINHRLKTSKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIE
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Known secondary structure (DSSP)



S






STTS
GGG

STTT
S
S

 .........80.........90.........100.........110.........120.........130.........140
Sequence DQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWE
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Known secondary structure (DSSP) TS
TT

SGGGSS
SSS
TTS
S
S

 .........150.........160.........170.........180.........190.........200.........210
Sequence NATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWS
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Known secondary structure (DSSP) TTTSTTT
S


GGGS

TTSS







S

TT

S



ST
 .........220.........230.........240.........250.........260.........270.........280
Sequence KGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKS
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Known secondary structure (DSSP) TT




TTS
TT

S


TTT
TTS



B

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence RDTIREYEFYTNPKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANR
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Known secondary structure (DSSP) S
S









STS

SSGGGGGSTTSTTS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence MLITGTPLQNNIKELAALVNFLMPGRFNQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRV
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Known secondary structure (DSSP)



TTS
STT



SSTGGG


GGGSGGGS

B

 .........430.........440.........450.........460.........470.........480.........490
Sequence ELSDVQTEYYKNILTKNYSIMNELKKASNHPYLFDNAEERVLQKFMTRENVLRGLIMSSGKMVLLDQLLT
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Known secondary structure (DSSP)


STTTS

-

TTS
S
SSSTT





STTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence RLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG
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Known secondary structure (DSSP) TT



S
TTTTT



SSSS
TSTT





STTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence LGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYDMDS
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Known secondary structure (DSSP) SS


SS

SS

SSTTTTTSSSS

S
BTTSSTTS



TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence IGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVHEEEKNRKEILEKLE
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Known secondary structure (DSSP)

S

SSSTTSSS
S

 .........710.........720.........730.........740.........750.........760.........770
Sequence KHATAYRAKLKSGEIKAENQPKDNPLTRLSLKKREKKAVLFNFKGVKSLNAESLLSRVEDLKYLKNLINS
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Known secondary structure (DSSP) TTT
S
SSS

SSST




B

BTTB


BST
 .........780.........790.........800.........810.........820.........830.........840
Sequence NYKDDPLKFSLGNNTPKPVQNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLGITDKIFLKKVPGAI
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Known secondary structure (DSSP) T
SS
GGG



S





SS
SS


T
TT
TT
TTTS
GGG




S

 .........850.....
Sequence HLGRRVDYLLSFLRG
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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