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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5nwtM_

Fold library idPDB HeaderMoleculeTitle
c5nwtM_3.76PDB header: transferaseChain: M: PDB Molecule: rna polymerase sigma-54 factor,rna polymerase sigma-54


Added to library: Sat Sep 16 08:31:24 2017
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)
TTS


SS
TT










SS


TTSS


SSSSSTT


S
 .........80.........90.........100.........110.........120.........130.........140
Sequence XXXXXXXXXQGETTQTLQDYLXWQVELTPFTDTDRAIATSIVDAVDDTGYLTIQIEDIVDSIGDDEIGLE
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Known secondary structure (DSSP) SSSTTT

S






TS


SSB
SSSBB
S


SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence EVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFAKETPWLEEARLIISDHLDLLANHDFRTLXRVTRLKE
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Known secondary structure (DSSP) TBSSSBT
SB
TTTS
SS
SSSSSSSSSTTTTTSSSSTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence EVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKVSGRWTVELNADSIPRLKINQQYAAXGNSARND
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Known secondary structure (DSSP) S
SSS


TTSSSS





SB

SSS
TTTTSS




S

STT

 .........290.........300.........310.........320.........330.........340.........350
Sequence ADGQFIRSNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYXKPXVLADIAQAVEXHESTISR
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Known secondary structure (DSSP) SSS
SS
SS

SSS




SS
TT


 .........360.........370.........380.........390.........400.........410.........420
Sequence VTTQKYLHSPRGIFELKYFFSSASSTAIRALVKKLIAAENPAKPLSDSKLTSXLSEQGIXVARRTVAKYR
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Known secondary structure (DSSP) TT


SSS
STTTS


S

SSS


SS


 .........430.
Sequence ESLSIPPSNQR
Predicted secondary structure








SS confidence










Known secondary structure (DSSP) T

TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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