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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5nw5B_

Fold library idPDB HeaderMoleculeTitle
c5nw5B_6.50PDB header: dna binding proteinChain: B: PDB Molecule: telomere length regulator protein rif1;


Added to library: Sat Jun 17 08:22:10 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ETRVNPRALEYWVSGEIHGLVDNESVSEFKEIIEGGLGILRQESEDYVARRFEVYATFNNIIPILTTKNV
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Known secondary structure (DSSP)


S
SSTTTSS
SS



TTTTTTSGGGTSS

SSTTTT




GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence NEVDQKFNILIVNIESIIEICIPHLQIAQDTLLSSSEKKNPFVIRLYVQIVRFFSAIMSNFKIVKWLTKR
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Known secondary structure (DSSP) TSS
SS


TTS
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence PDLVNKLKVIYRWTTGALRNENSNKIIITAQVSFLRDEKFGTFFLSNEEIKPIISTFTEIMEINSHNLIY
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Known secondary structure (DSSP) TTTTTTSTT



TS
TTTT






 .........220.........230.........240.........250.........260.........270.........280
Sequence EKLLLIRGFLSKYPKLMIETVTSWLPGEVLPRIIIGDEIYSMKILITSIVVLLELLKKCLDFVDEHERIY
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Known secondary structure (DSSP) STTS
GGGS
TTTTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence QCIMLSPVCETIPEKFLSKLPLNSYDSANLDKVTIGHLLTQQIKNYIVVKNDNKIAMDLWLSMTGLLYDS
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Known secondary structure (DSSP) TTSBS
TT



S
TTT
BTT


S
 .........360.........370.........380.........390.........400.........410.........420
Sequence GKRVYDLTSESNKVWFDLNNLCFINNHPKTRLMSIKVWRIITYCICTKISQKNQEGNKSLLSLLRTPFQM
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Known secondary structure (DSSP) TTGGGGGGSTT

TTTS

TT
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence TLPYVNDPSAREGIIYHLLGVVYTAFTSNKNLSTDMFELFWDHLITPIYEDYVFKYDSIHLQNVLFTVLH
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Known secondary structure (DSSP) GGGTTSTT



TTTTTTTTTTGGG


 .........500.........510.........520.........530.........540.........550.........560
Sequence LLIGGKNADVALEKKHIHPMSVIASEGVKLKDISSLPPQIIKREYDKIMKVVFQAVEVAISNVNLAHDLI
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Known secondary structure (DSSP) T




S






SGGGGGSSS


GGG




SGGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence LTSLKHLPEDRKDQTHLESFSSLILKVTQNNKDTPIFRDFFGAVTSSFVYTFLDLFLRKNDSSLVNFNIQ
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Known secondary structure (DSSP) T

GGG
SS


T
SSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence ISKVGISQGNMTLDLLKDVIRKARNETSEFLIIEKFLELDDKKTEVYAQNWVGSTLLPPNISFREFQSLA
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Known secondary structure (DSSP) TTS
S

SSSS
GGG

TTS


TT

 .........710.........720.........730.........740.........750.........760.........770
Sequence NIVNKVPNENSIENFLDLCLKLSFPVNLFTLLHVSMWSNNNFIYFIQSYVSKNENKLNVDLITLLKTSLP
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Known secondary structure (DSSP) S

TGGG
SS


SGGG

GGGS
TSS

GG
 .........780.........790.........800.........810.........820.........830.........840
Sequence GNPELFSGLLPFLRRNKFMDILEYCIHSNPNLLNSIPDLNSDLLLKLLPRSRASYFAANIKLFKCSEQLT
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Known secondary structure (DSSP) G
TTS


GGGGTT
TT

TTS


S
GGGTGGGGGGS
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence LVRWLLKGQQLEQLNQNFSEIENVLQNASDSELEKSEIIRELLHLAMANPIEPLFSGLLNFCIKNNMADH
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Known secondary structure (DSSP) TT
STTTT

S


TTTSSTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence LDEFCGNMTSEVLFKISPELLLKLLTYKEKPNGKLLAAVIEKIENGDDDYILELLEKIIIQKEIQILEKL
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Known secondary structure (DSSP) S

TTS
TT

GGGGGTTTT
T
GGGG

T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KEPLLVFFLNPVSSNMQKHKKSTNMLRELVLLYLTKPLSRSAAKKFFSMLISILPPNPNYQTIDMVNLLI
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Known secondary structure (DSSP) TSGGGG

T
SS

TTTTS



S

 .........1060.........1070.........1080.....
Sequence DLIKSHNRKFKDKRTYNATLKTIGKWIQESGVVHQ
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Known secondary structure (DSSP) TTTS

SSSSTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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