PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5nupF_

Fold library id	PDB Header	Molecule	Title
c5nupF_	2.90	PDB header: membrane protein	Chain: F: PDB Molecule: abc transporter permease;

Links to external resources
Added to library: Sat Oct 28 08:28:35 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R S D P L E G F N R T M F N F N F N V V D P Y V L R P V A V A W R D Y V P Q P A R N G L S N F T S N L E E P A V M V N Y F L Q G D P Y K G M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V H F T R F F L N T I L G M G G L I D V A G M A N P Q L Q R V E P H R F G S T L G H Y G V G Y G P Y V Q L P F Y G S F T L R D E G G D M A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T S
G G G
T T
S
T T T
S S S T T T G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . .

Sequence G L Y P V L S W L T W P M S I G K W A V E G I E T R A Q L L D S D G L L R Q S S D P Y I L M R E A Y F Q R H D F I A N G G K L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G S S T T G G G S
G G G T G G G T S S S S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	S	D	P	L	E	G	F	N	R	T	M	F	N	F	N	F	N	V	V	D	P	Y	V	L	R	P	V	A	V	A	W	R	D	Y	V	P	Q	P	A	R	N	G	L	S	N	F	T	S	N	L	E	E	P	A	V	M	V	N	Y	F	L	Q	G	D	P	Y	K	G	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T														T					T	T											S															T	T											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	H	F	T	R	F	F	L	N	T	I	L	G	M	G	G	L	I	D	V	A	G	M	A	N	P	Q	L	Q	R	V	E	P	H	R	F	G	S	T	L	G	H	Y	G	V	G	Y	G	P	Y	V	Q	L	P	F	Y	G	S	F	T	L	R	D	E	G	G	D	M	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T	T	T	T	S								G	G	G															T	T					S					T	T	T					S	S	S	T	T	T	G	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Sequence	G	L	Y	P	V	L	S	W	L	T	W	P	M	S	I	G	K	W	A	V	E	G	I	E	T	R	A	Q	L	L	D	S	D	G	L	L	R	Q	S	S	D	P	Y	I	L	M	R	E	A	Y	F	Q	R	H	D	F	I	A	N	G	G	K	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	S	S	T	T	G	G	G	S																				G	G	G	T	G	G	G	T	S	S	S	S																		S	S