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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5nugB_

Fold library idPDB HeaderMoleculeTitle
c5nugB_3.80PDB header: motor proteinChain: B: PDB Molecule: cytoplasmic dynein 1 heavy chain 1;


Added to library: Sat Jul 1 10:26:34 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AIVKDVLLVAQGEMALEEFLKQIREVWNTYELDLVNYQNKCRLIRGWDDLFNKVKEHINSVSAMKLSPYY
Predicted secondary structure











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Known secondary structure (DSSP)

B
TTT
SSSG
 .........80.........90.........100.........110.........120.........130.........140
Sequence KVFEEDALSWEDKLNRIMALFDVWIDVQRRWVYLEGIFTGSADIKHLLPVETQRFQSISTEFLALMKKVS
Predicted secondary structure





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Known secondary structure (DSSP) GGTSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KSPLVMDVLNIQGVQRSLERLADLLGKIQKALGEYLERERSSFPRFYFVGDEDLLEIIGNSKNVAKLQKH
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Known secondary structure (DSSP) S
BSTTTSGGGGGS
TTTT
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence FKKMFAGVSSIILNEDNSVVLGISSREGEEVMFKTPVSITEHPKINEWLTLVEKEMRVTLAKLLAESVTE
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Known secondary structure (DSSP) SSS

B
TTSSSSS
SSS


 .........290.........300.........310.........320.........330.........340.........350
Sequence VEIFGKATSIDPNTYITWIDKYQAQLVVLSAQIAWSENVETALSSAAPLHSVLSNVEVTLNVLADSVLME
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Known secondary structure (DSSP) SSS

S


S
 .........360.........370.........380.........390.........400.........410.........420
Sequence QPPLRRRKLEHLITELVHQRDVTRSLIKSKIDNAKSFEWLSQMRFYFDPKQTDVLQQLSIQMANAKFNYG
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Known secondary structure (DSSP)

S



TTSS


TT
S
STT


TT



 .........430.........440.........450.........460.........470.........480.........490
Sequence FEYLGVQDKLVQTPLTDRCYLTMTQALEARLGGSPFGPAGTGKTESVKALGHQLGRFVLVFNCDETFDFQ
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Known secondary structure (DSSP)




S






TT

SSSSSST


TT

 .........500.........510.........520.........530.........540.........550.........560
Sequence AMGRIFVGLCQVGAWGCFDEFNRLEERMLSAVSQQVQCIQEALREHSNPITCELLNKQVKVSPDMAIFIT
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Known secondary structure (DSSP) TTTT
S



SSSS

TT
B
B
 .........570.........580.........590.........600.........610.........620.........630
Sequence MNPGYAGRSNLPDNLKKLFRSLAMTKPDRQLIAQVMLYSQGFRTAEVLANKIVPFFKLCDEQLSSQSHYD
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Known secondary structure (DSSP) B
TTSSS




TTSTTT






TTSS


SS

 .........640.........650.........660.........670.........680.........690.........700
Sequence FGLRALKSVLVSAGNVKRERIQKIKREAENLPEQEILIQSVCETMVPKLVAEDIPLLFSLLSDVFPGVQY
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Known secondary structure (DSSP)
S





S
GGG
SS


 .........710.........720.........730.........740.........750.........760.........770
Sequence HRGEMTALREELKKVCQEMYLTYGDGEEVGGMWVEKVLQLYQITQINHGLMMVGPSGSGKSMAWRVLLKA
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Known secondary structure (DSSP)




TT




SSSTT
S

SSSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence LERLEGVEGVAHIIDPKAISKDHLYGTLDPNTREWTDGLFTHVLRKIIDSVRGELQKRQWIVFDGDVDPE
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Known secondary structure (DSSP)





TTTS

SSS



SSSTTTS

S


TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence WVENLNSVLDDNKLLTLPNGERLSLPPNVRIMFEVQDLKYATLATVSRCGMVWFSEDVLSTDMIFNNFLA
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Known secondary structure (DSSP) TSTT


TT




SSS

SS

TT



TTTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence RLRSIPLDEASPMLQIQRDAATIMQPYFTSNGLVTKALEHAFQLEHIMDLTRLRCLGSLFSMLHQACRNV
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Known secondary structure (DSSP) SS
S



SSSTTTTS

SS


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AQYNANHPDFPMQIEQLERYIQRYLVYAILWSLSGDSRLKMRAELGEYIRRITTVPLPTAPNIPIIDYEV
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Known secondary structure (DSSP)
SSS


SSS
S






SSS
STT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence SISGEWSPWQAKVPQIEVETHKVAAPDVVVPTLDTVRHEALLYTWLAEHKPLVLCGPPGSGKTMTLFSAL
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Known secondary structure (DSSP)
TTSSSTTTS





SSSSS
SS




TT

SSSSSSTT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence RALPDMEVVGLNFSSATTPELLLKTFDHYCEYRRTPNGVVLAPVQLGKWLVLFCDEINLPDMDKYGTQRV
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Known secondary structure (DSSP) T
TT


SS


SSSSSTT
TTTT
S


TTS

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence ISFIRQMVEHGGFYRTSDQTWVKLERIQFVGACNPPTDPGRKPLSHRFLRHVPVVYVDYPGPASLTQIYG
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Known secondary structure (DSSP) SS

TTTT

S


TTSSS




TT






 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence TFNRAMLRLIPSLRTYAEPLTAAMVEFYTMSQERFTQDTQPHYIYSPREMTRWVRGIFEALRPLETLPVE
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Known secondary structure (DSSP) TTSSTTTGGGS

TTTSTT



TTT



 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence GLIRIWAHEALRLFQDRLVEDEERRWTDENIDTVALKHFPNIDREKAMSRPILYSNWLSKDYIPVDQEEL
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Known secondary structure (DSSP) TT


S
SS
S
SS
SSSSSS

 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence RDYVKARLKVFYEEELDVPLVLFNEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAWMNGLSVY
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Known secondary structure (DSSP) TTS







STT


TTS
ST
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence QIKVHRKYTGEDFDEDLRTVLRRSGCKNEKIAFIMDESNVLDSGFLERMNTLLANGEVPGLFEGDEYATL
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Known secondary structure (DSSP)




SS

TS


GGG

SS

TTSS
T
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence MTQCKEGAQKEGLMLDSHEELYKWFTSQVIRNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWST
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Known secondary structure (DSSP) T



SS




GGGTTTSS

 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence EALYQVGKEFTSKMDLEKPNYIVPDYMPVVYDKLPQPPSHREAIVNSCVFVHQTLHQANARLAKRGGRTM
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Known secondary structure (DSSP) TTS



SS



SS


SSSS

SS

ST



 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence AITPRHYLDFINHYANLFHEKRSELEEQQMHLNVGLRKIKETVDQVEELRRDLRIKSQELEVKNAAANDK
Predicted secondary structure
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Known secondary structure (DSSP)




 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LKKMVKDQQEAEKKQMIRDLEASIARYKEEYAVLISEAQAIKADLAAVEAKVNRSTALLKSLSAERERWE
Predicted secondary structure
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Known secondary structure (DSSP)

 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence KTSETFKNQMSTIAGDCLLSAAFIAYAGYFDQQMRQNLFTTWSHHLQQANIQFRTDIARTEYLSNADERL
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Known secondary structure (DSSP) SSS

T




SS
S
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence RWQASSLPADDLCTENAIMLKRFNRYPLIIDPSGQATEFIMNEYKDRKITRTSFLDDAFRKNLESALRFG
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Known secondary structure (DSSP) TT

SS
SS

SSSTTTTT
SSSSTTT
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence NPLLVQDVESYDPVLNPVLNREVRRTGGRVLITLGDQDIDLSPSFVIFLSTRDPTVEFPPDLCSRVTFVN
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Known secondary structure (DSSP)

GGG

GGGT


TT



TT



TT


S
S




S
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence FTVTRSSLQSQCLNEVLKAERPDVDEKRSDLLKLQGEFQLRLRQLEKSLLQALNEVKGRILDDDTIITTL
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Known secondary structure (DSSP)



S

S
TTT
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence ENLKREAAEVTRKVEETDIVMQEVETVSQQYLPLSTACSSIYFTMESLKQIHFLYQYSLQFFLDIYHNVL
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Known secondary structure (DSSP)


SSS



T
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence YENPNLVTDHTQRLSIITKDLFQVAFNRVARGMLHQDHITFAMLLARIKLKGTGEPTYDAEFQHFLRGNE
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Known secondary structure (DSSP) TS
S



STS






GGGG
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence IVLSAGSTPRIQGLTVEQAEAVVRLSCLPAFKDLIAKVQADEQFGIWLDSSSPEQTVPYLWTPATPIGQA
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Known secondary structure (DSSP)



TT




SS

TTSSTT
TTT
S

SSSSSS
TTT









 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence IHRLLLIQAFRPDRLLAMAHMFVSTNLGESFMSIMEQPLDLTHIVGTEVKPNTPVLMCSVPGYDASGHVE
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Known secondary structure (DSSP)
STTT
TTSS
TTTS


TS
TTS



TT


 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence DLAAEQNTQITSIAIGSAEGFNQADKAINTAVKSGRWVMLKNVHLAPGWLMQLEKKLHSLQPHACFRLFL
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Known secondary structure (DSSP) T


SSS


GGG




SS

 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence TMEINPKVPVNLLRAGRIFVFEPPPGVKANMLRTFSSIPVSRICKSPNERARLYFLLAWFHAIIQERLRY
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Known secondary structure (DSSP)



TTS
S


S
SSS
TSS
TS
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence APLGWSKKYEFGESDLRSACDTVDTWLDDTAKGRQNISPDKIPWSALKTLMAQSIYGGRVDNEFDQRLLN
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Known secondary structure (DSSP) TTTSSSS



S
SS
S


TTTS
T

S
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence TFLERLFTTRSFDSEFKLACKVDGHKDIQMPDGIRREEFVQWVELLPDTQTPSWLGLPNNAERVLLTTQG
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Known secondary structure (DSSP) TT
SS




SSSSS








SS
SS

GGGGT

 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence VDMISKMLKMQMLETLHTTASNWLHLIPQTLSHLKRTENIKDPLFRFFEREVKMGAKLLQDVRQDLADVV
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Known secondary structure (DSSP)

SGGG











 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence QVCEGKKKQTNYLRTLINELVKGILPRSWSHYTVPAGMTVIQWVSDFSERIKQLQNISLAAASKELKNIH
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Known secondary structure (DSSP) SSS



TS

TTT

S

STT



TTSSS
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence VCLGGLFVPEAYITATRQYVAQANSWSLEELCLEVNVSFGVTGLKLQGATCNNNKLSLSNAISTALPLTQ
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Known secondary structure (DSSP) TTTSSSST

STT





SSS
B
 .........2880.........2890.........2900.........2910.........2920
Sequence LRWVKQSVVTLPVYLNFTRADLIFTVDFEIATKEDPRSFYERGVAVLCTE
Predicted secondary structure















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Known secondary structure (DSSP)


TT

SB
SSS
T



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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