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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5nqaA_

Fold library idPDB HeaderMoleculeTitle
c5nqaA_1.90PDB header: transferaseChain: A: PDB Molecule: polypeptide n-acetylgalactosaminyltransferase 4;


Added to library: Sat Dec 23 08:39:16 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DLSRPLYKKPPADSRALGEWGKASKLQLNEDELKQQEELIERYAINIYLSDRISLHRHIEDKRMYECKSQ
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Known secondary structure (DSSP)
TT
BSS





TTSTTGGG







SS
TTS
TT







T
 .........80.........90.........100.........110.........120.........130.........140
Sequence KFNYRTLPTTSVIIAFYNEAWSTLLRTIHSVLETSPAVLLKEIILVDDLSDRVYLKTQLETYISNLDRVR
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Known secondary structure (DSSP)


TTTS

SS

SBTTT
S


GGGTTTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LIRTNKREGLVRARLIGATFATGDVLTFLDCHCECNSGWLEPLLERIGRDETAVVCPVIDTIDWNTFEFY
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Known secondary structure (DSSP)
SS




SS

SS
TT
S
TT
TTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence MQIGEPMIGGFDWRLTFQWHSVPKQERDRRISRIDPIRSPTMAGGLFAVSKKYFQYLGTYDTGMEVWGGE
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Known secondary structure (DSSP)


SS


TT





SSTTS

SS

SS
TTSS
TT

SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence NLELSFRVWQCGGKLEIHPCSHVGHVFPKNFLQNTARAAEVWMDEYKEHFYNRNPPARKEAYGDISERKL
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Known secondary structure (DSSP) TT






GGGSGGGGGS




 .........360.........370.........380.........390.........400.........410.........420
Sequence LRERLRCKSFDWYLKNVFPNLHVPEDRPGWHGAIRSRGISSECLDYNSPDNNPTGANLSLFGCHGQGGNQ
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Known secondary structure (DSSP) TT


T


-





TTSSSSTT



SS
TT
S



S

GGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence FFEYTSNKEIRFNSVTELCAEVPEQKNYVGMQNCPKDGFPVPANIIWHFKEDGTIFHPHSGLCLSAYRTP
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Known secondary structure (DSSP)

TT


SSS


TT

S



TTS


GGG


TTS
TTTT
T
 .........500.........510....
Sequence EGRPDVQMRTCDALDKNQIWSFEK
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Known secondary structure (DSSP) TS



TT
GGG


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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