Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5np1A_

Fold library idPDB HeaderMoleculeTitle
c5np1A_5.70PDB header: transferaseChain: A: PDB Molecule: serine-protein kinase atm;


Added to library: Sat May 20 08:38:45 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRDAVFRFLQKYIQKETECLRIAKKKMQE
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP)
SSTTT
TT

TTT


T
 .........80.........90.........100.........110.........120.........130.........140
Sequence ISSLVKYFIKCANRRAPRLKCQELLNYIMDTVKDSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLK
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) T
S


T







TTS




TS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PSQDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIFLKTLAVNF
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) SSS

TTT




GGGTTS
S
TTTS
T
 .........220.........230.........240.........250.........260.........270.........280
Sequence RIRVCELGDEILPTLLYIWTQHRLNDSLKEVIIELFQLQIYSTKWRSILYNLYDLLVNEISHNIAVKENL
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) TTS

S
STTTTTTTT

T




 .........290.........300.........310.........320.........330.........340.........350
Sequence IELMADICHQVFNPWLQIATQLISKLSPLLMILSQLLPQQRHGERTPYVLRCLTEVALCQDKRSNLESSQ
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) TT


T



S


SSSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence KSDLLKLWNKIWCITFRGISSEQIQAENFGLLGAIIQGSLVEVDREFWKLFTGSACRPAVCCLTLALTTS
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP)

S





SSTTT

GGGTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence VKMGIEQNMCEVNRSFSLKESIMKWLLFYQLEGDLENFPHLVLEKILVSLTMKNCKAAMNFFQSVPECEH
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)
TTTT
SSGGG
STTGGGS


GGGTTTT
TT

SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence HQKDKEELSFSEVEELFLQTTFDKMDFLTFSVHQNLKESLDRCLLGLSEQLLNNYSSEITNSETLVRCSR
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) S

SS
SS
TTGGGTTTTTTT

TTGGG

SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence LLVGVLGCYCYMGVIAEEEAYKSELFQKAKSLMQCAGESITASFIKKPFDRGEVESMEDDTNGNLMEVED
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) TT



S

STTTSSSTT

GGGTTS
STT
 .........640.........650.........660.........670.........680.........690.........700
Sequence QSSMNLFNDYSQSTIGAINPLAEEYLAADIRRKLLMLIDSHLHMYLMLLKELPGEEYPLPMEDVLELLKP
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)



T



T

TGGGGTT


SS
GGG
 .........710.........720.........730.........740.........750.........760.........770
Sequence LSNVCSLYRRCKTILNHVLHVVKNLGQSNMDSENTRDAQGQFLTVIGAFKYIFSVRMALVNCLKTLLEAD
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP)

TTTTTTTT
S

SSTTTT
S


TTTTTTTT
TSSTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence PYSKWAILNVMGKDFPVNEVFTQFLADNHHQVRMLAAESSRLLKALPLKLQQTAFENAYLKAQEGMREMS
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TTSGGGGGGTTTTSS

GGG

TTTSSSS

 .........850.........860.........870.........880.........890.........900.........910
Sequence HSAENPETLDEIYNRKSVLLTLIAVVLSCSPICEKQALFALCVKKVLEKVSETFGMASHLDYLVLEWLFI
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) T

GGGTTTSSTTTTT


TTTGGGGG




TT

T
 .........920.........930.........940.........950.........960.........970.........980
Sequence LLNYTNIEDFYRSCYKVLIPHLVIRSHFDEVKSIQEDWKSLLTDCFPKILVNILPYFAYEGTRDSGMAQQ
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP)
STTSSTTTT

GGGGGGGGG



GGGGG

TTTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence HLFISNLPEIVVELLMTLHEPANSSASQSTDLCDFSGDLDPAPNPPHFPSHVIKATFAYISNCHKTKLSK
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)
GGG

SSS




STTTGGG


GGGGGTTTTTTT






TTT




 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence SPDSYQKILLAICEQAAETNNVYKKHRILKIYHLFVSLLLKDIKSGLGGAWAFVLRDVIYTLIHYINQRP
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)
SSTTTTTTTTTT

T
SSTTTT
SS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence SCIMDVSLRSFSLCCDLLSQVALENHLHVIVGTLIPLVYEQVEVQKQVLDLLKYLVIDNKDNENLYITIK
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) S


TTGGG
SGGGG

TTTTTS
TT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LLDPFPDHVVFKDLRITQQKIKYSRGLEEINHFLSVSVYDALPLTRLEGLKDLRRQLELHKDQMVDIMRA
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TT

TT

TTTT


TS



GGGGS
STT

ST
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence SQDNPQDGIMVKLVVNLLQLSKMAINHTGEKEVLEAVGSCLGEVGPIDFSTIAIQHSKDASYTKALKLFE
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) TTTTSS
STTT
SSS
TTTGGGGTTT






S
S





 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence DKELQWTFIMLTYLNNTLVEDCVKVRSAAVTCLKNILATKTGHSFWEIYKMTTDPMLAYLQPFRTSPLSE
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) T

STT



TTGGGSTSS






 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence NHDIWIKTLTCAFLDSGGTKCEILQLLKPMCEVKTDFCQTVLPYLIHDILLQDTNESWRNLLSTHVQGFF
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)




SGGGTTTT
SSS
S

SS
TTTS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence TSCLRHFSQTSRSTTPANLDSESEHFFRCCLDKKSQRTMLAVVDYMRRQKRPSSGTIFNDAFWLDLNYLE
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)
SSTTT



SSTTTTTSS

SSTTS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence VAKVAQSCAAHFTALLYAEIYADKKSMDDQEKRSLAEETGISLQDLLLEIYRSIGEPDSLYGCGGCHILS
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)



TT
T


 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence VYLKGLDYELEELHYQAAWRNMQWDHCTSVSSYHESLYNALQSLRDSTFYESLKYARVKEVEEMCKRSLE
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP)


S
GGGG

T


T

S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence SVYSLYPTLSRLQAIGELESIGELFSRTHRQLSEVYIKWQKHSQLLKDSDFSFQEPIMALRTVILEILME
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP)
STT

TSSS
T
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence KEMDNSQRECIKDILTKHLVELSILARTFKNTQLPERAIFQIKQYNSVSCGVSEWQLEEAQVFWAKKEQS
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) GGGST
STGGGS
SS
TTGGGGGSSSSTT
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LALSILKQMIKKLDASCAPSLKLTYTECLRVCGNWLAETCLENPAVIMQTYLEKAVEVAGNSDELRNGKM
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) TT

T
S
TTTT

 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence KAFLSLARFSDTQYQRIENYMKSSEFENKELALRALKEDRKRFLCKAVENYINCLLSGEEHDMWVFRLCS
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP) TT

T
TTSGGG
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence LWLENSGVSEVNGMMKRDGMKIPTYKFLPLMYQLAARMGGGLGFHEVLNNLISRISMDHPHHTLFIILAL
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) TTS
GGGGS
GGG


TTTS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence ANANRDEFDEDRTEAANRIICTIRSRRPQMVRSVEALCDAYIILANLDRKGINIPADQPITKLKNLEDVV
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TS





TS


TT




SS




SSTTTTTGGG
S
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence VPTMEIKVDHTGEYGNLVTIQSFKAEFRLAGGVNLPKIIDCVGSDGKERRQLVKGRDDLRQDAVMQQVFQ
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP) SS

SS




TT
S







BSS

B

SSS


TT


SS

 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence MCNTLLQRNTETRKRKLTICTYKVVPLSQRSGVLEWCTGTVPIGEFLVNNEDGAHKRYRPNDFSAFQCQK
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)
T







B
SSSS

B



S
B

TTTTTTTTT

GGG
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence KMMFEEKYEVFMDVCQNFQPVFRYFCMEKFLDPAIWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILIN
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TT

S

GGG

STT



STTT
B
B
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence EQSAELVHIDLGVAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMRNSQETLLTIV
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) TTTTB








SGGGGGSSS


S




SSS
GGGTTTT
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence EVLLYDPLFDWTMNPLKALYLIDQSFNKVAERVLMRLQEKLKGVEEGTVLSVGGQVNLLIQQAIDPKNLS
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) TSGGGGTTT

SGGGG

TT

TTS


TT
 .........2460
Sequence RLFPGWKAWV
Predicted secondary structure







SS confidence









Known secondary structure (DSSP)

TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D