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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5np0A_

Fold library idPDB HeaderMoleculeTitle
c5np0A_5.70PDB header: signaling proteinChain: A: PDB Molecule: serine-protein kinase atm;


Added to library: Sat May 20 08:38:09 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRDAVFRFLQKYIQKETECLRIAKKKMQE
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Known secondary structure (DSSP)
TTSSSTTTS
TTTTSGGG

T



 .........80.........90.........100.........110.........120.........130.........140
Sequence ISSLVKYFIKCANRRAPRLKCQELLNYIMDTVKDSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLK
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Known secondary structure (DSSP)
SS


TTSS




STT




ST
 .........150.........160.........170.........180.........190.........200.........210
Sequence PSQDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIFLKTLAVNF
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Known secondary structure (DSSP) TT


SSS



GGGS
SSGGGTTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence RIRVCELGDEILPTLLYIWTQHRLNDSLKEVIIELFQLQIYSTKWRSILYNLYDLLVNEISHNIAVKENL
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Known secondary structure (DSSP) GGGSGGGTTTSSTT

TTTTT


TTTS


GGGGST
 .........290.........300.........310.........320.........330.........340.........350
Sequence IELMADICHQVFNPWLQIATQLISKLSPLLMILSQLLPQQRHGERTPYVLRCLTEVALCQDQKSDLLKLW
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Known secondary structure (DSSP) TT


T


GGGTTS
S

GGGTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence NKIWCITFRGISSEQIQAENFGLLGAIIQGSLVEVDREFWKLFTGSACRPAVCCLTLALTTSVKMGIEQN
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Known secondary structure (DSSP)
SS
S
ST


SSTTT

TTTT


TTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence MCEVNRSFSIMKWLLFYQLEGDLENFPHLVLEKILVSLTMKNCKAAMNFFQSVPECEHHQKDKEELSFSE
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Known secondary structure (DSSP) TT



TTTT


GGGGGTT

SSTTS
STT
SSTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence VEELFLQTTFDKMDFLTFSVHQNLKESLDRCLLGLSEQLLNNYSSEITNSETLVRCSRLLVGVLGCYCYM
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Known secondary structure (DSSP) TTTTTT


TTTTTST
S
TT



S

TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence GVIAEEEAYKSELFQKAKSLMQCAGESITASFIKKPFDRGEVESMEDDTNGNLMEVEDQSSMNLFNDYSQ
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Known secondary structure (DSSP) TTTS
ST



TTTTTTTT

S
T


 .........640.........650.........660.........670.........680.........690.........700
Sequence STIGAINPLAEEYLAADIRRKLLMLIDSHLHMYLMLLKELPGEEYPLPMEDVLELLKPLSNVCSLYRRCK
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Known secondary structure (DSSP) TT




TTS


SSTTT

 .........710.........720.........730.........740.........750.........760.........770
Sequence TILNHVLHVVKNLGQSNMDSENTRDAQGQFLTVIGAFKYIFSVRMALVNCLKTLLEADPYSKWAILNVMG
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Known secondary structure (DSSP) TTTTTSS

STTTT


TTTTTTT

TTTTTGGGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence KDFPVNEVFTQFLADNHHQVRMLAAESSRLLKALPLKLQQTAFENAYLKAQEGMREMSHSAENPETLDEI
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Known secondary structure (DSSP) S

T

TTTSSS

TTTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence YNRKSVLLTLIAVVLSCSPICEKQALFALCVKKVLEKVSETFGMASHLDYLVLEWLFILLNYTNIEDFYR
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Known secondary structure (DSSP) TTSSTT

TT

GGGG


TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence SCYKVLIPHLVIRSHFDEVKSIQEDWKSLLTDCFPKILVNILPYFAYEGTRDSGMAQQRETATKPEIVVE
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Known secondary structure (DSSP) T

GGGGSSTT

SSTTTTSSTT


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LLMTLHEPANSSALCDFSGDLDPAPPPHFPSHVIKATAYISNCHKTKKSPDSYQKILLAICEQAAETNNV
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Known secondary structure (DSSP) S




STTTTT


TTSS

T





TTT



GGGTTSTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence YKKHRILKIYHLFVSLLLKDIKSGLGGAWAFVLRDVIYTLIHYINQRPSCIMDVSLRSFSLCCDLLSQVA
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Known secondary structure (DSSP) TTTTTT
SGGGTSTT
SS

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LENHLHVIVGTLIPLVYEQVEVQKQVLDLLKYLVIDNKDNENLYITIKLLDPFPDHVVFKDLRITQQKIK
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Known secondary structure (DSSP) TTTT
STTTT

TTTTS
TT

TTT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence YSRGLEEINHFLSVSVYDALPLTRLEGLKDLRRQLELHKDQMVDIMRASQDNPQDGIMVKLVVNLLQLSK
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Known secondary structure (DSSP)

TTTT



GGGSSSS



TTT

TTGGGSS
S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence MAINHTGEKEVLEAVGSCLGEVGPIDFSTIAIQHSKDASYTKALKLFEDKELQWTFIMLTYLNNTLVEDC
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Known secondary structure (DSSP) TTTTTTSS
TTGGG
S
S


S
SS




TTS
ST
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence VKVRSAAVTCLKNILATKTGHSFWEIYKMTTDPMLAYLQPFRTSPLSENHDIWIKTLTCAFLDSGGTKCE
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Known secondary structure (DSSP)

S
TTSTTT
TSS









S
TTTTTTTTT
SSS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence ILQLLKPMCEVKTDFCQTVLPYLIHDILLQDTNESWRNLLSTHVQGFFTSCLRHFSQTSRSTTPANLDSE
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Known secondary structure (DSSP) TS


S
S

SS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence SEHFFRCCLDKKSQRTMLAVVDYMRRQKRPSSGTIFNDAFWLDLNYLEVAKVAQSCAAHFTALLYAEIYA
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Known secondary structure (DSSP) TGGG



STTGGGSS

SS





 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence DKKSMDDQEKRSLAEETGISLQDLLLEIYRSIGEPDSLYGCGGGKMLQPITRLRTYEHEAMWGKALVTYD
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Known secondary structure (DSSP)

TTST
TTSGGGG


SS

 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence LETAIPSSTRQAGIIQALQNLGLCHILSVYLKGLDYENKDWCPELEELHYQAAWRNMQWDHCTSVSSYHE
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Known secondary structure (DSSP) TTSSS

ST

S

SSSSTTTT

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence SLYNALQSLRDSTFYESLKYARVKEVEEMCKRSLESVYSLYPTLSRLQAIGELESIGELFSRTHRQLSEV
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Known secondary structure (DSSP)



S

SSST

 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence YIKWQKHSQLLKDSDFSFQEPIMALRTVILEILMEKEMDNSQRECIKDILTKHLVELSILARTFKNTQLP
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Known secondary structure (DSSP) TTS

GGGSST

 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence ERAIFQIKQYNSVSCGVSEWQLEEAQVFWAKKEQSLALSILKQMIKKLDASCAPSLKLTYTECLRVCGNW
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Known secondary structure (DSSP) TGGG

SS
SSSTTT

T
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LAETCLENPAVIMQTYLEKAVEVAGNSDELRNGKMKAFLSLARFSDTQYQRIENYMKSSEFENKQALLKR
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Known secondary structure (DSSP) T
S


 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence AKERYTVKVQRELELDELALRALKEDRKRFLCKAVENYINCLLSGEEHDMWVFRLCSLWLENSGVSEVNG
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Known secondary structure (DSSP) T



TSTTT
SS
TTS
T
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence MMKRDGMKIPTYKFLPLMYQLAARMGGGLGFHEVLNNLISRISMDHPHHTLFIILALANANRDEFDEDRT
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Known secondary structure (DSSP) GGG

GGGGGGT


TTTSSTS





 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence EAANRIICTIRSRRPQMVRSVEALCDAYIILANLDRKGINIPADQPITKLKNLEDVVVPTMEIKVDHTGE
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Known secondary structure (DSSP) STT
TT




SS




TTT
SSS


S




TT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence YGNLVTIQSFKAEFRLAGGVNLPKIIDCVGSDGKERRQLVKGRDDLRQDAVMQQVFQMCNTLLQRNTETR
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Known secondary structure (DSSP)











S

B

STT

B

TT

B

SS


 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence KRKLTICTYKVVPLSQRSGVLEWCTGTVPIGEFLVNNEDGAHKRYRPNDFSAFQCQKKMMFEEKYEVFMD
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Known secondary structure (DSSP) T






TT


S



TTTTT
SS

GGGG

 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence VCQNFQPVFRYFCMEKFLDPAIWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGV
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Known secondary structure (DSSP)


T

TTT



STTTS

BTTTTB







 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence AFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMRNSQETLLTIVEVLLYDPLFDWTM
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Known secondary structure (DSSP)
TTTTTTSSS


S




SSTTGGGTTSTTTTTTT
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence NPLKALYLQQRPEDETELHIDQSFNKVAERVLMRLQEKLKGVEEGTVLSVGGQVNLLIQQAIDPKNLSRL
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Known secondary structure (DSSP)

STT

TT

TTS


TT
T
 ........
Sequence FPGWKAWV
Predicted secondary structure







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Known secondary structure (DSSP)
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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