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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5nkkB_

Fold library idPDB HeaderMoleculeTitle
c5nkkB_2.64PDB header: transcriptionChain: B: PDB Molecule: protein smg-9;


Added to library: Sat Apr 22 08:17:56 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKESVRFLTDFGEISDAISDLLTSSPNFNVISAIGPQGAGKSTLLSMLAGNNSRQMYREYVFRPVQTIQI
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Known secondary structure (DSSP)

S
SB
GGG
B
TTSGGG

S
S



GGG
TT

TTS
GGG
SS






 .........80.........90.........100.........110.........120.........130.........140
Sequence DIYIVNHQIFLDCQPMYDDSTAMSDTLRLTAFLLYVSHTVLVVSETHYDKVIIDTLRVAEQIRPYLAIFR
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Known secondary structure (DSSP) TT




TS
SSSSS
TT




SS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence PKLAIDRKTNLVFIKTKASSIDLAPTVIREREELLRLSFQDSRWLKVSQEPFKTLIVLEEFDEQIAELRE
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Known secondary structure (DSSP) S
B
SS


S

SGGG
TTTT
SS

STTSS



 .........220.........230.........240.........250......
Sequence ELQKNREDFTVETAAMDEKKWLDMCREVIRDKTLHKTLKEYQRAMT
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Known secondary structure (DSSP) TTTS


SBSSTT


T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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