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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5nijB_

Fold library idPDB HeaderMoleculeTitle
c5nijB_2.75PDB header: ligaseChain: B: PDB Molecule: vacuolar-processing enzyme gamma-isozyme;


Added to library: Sat Mar 3 08:33:59 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FQSGTRWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIINSPHGK
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Known secondary structure (DSSP)


S




SGGGTTT

GGG



STT
TT
SSTT


SSTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence DVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSHGGPGVLGMPTSPYLYAN
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Known secondary structure (DSSP)


TT


SB
GGG
ST
TTT

SS







TT


TT

SSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence DLNDVLKKKHALGTYKSLVFYLEAESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEEPSPPPEYET
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Known secondary structure (DSSP) TT

S


GGGGTTTT

SSSSSS
SSS

BS
SS
SSS

SS
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence CLGDLYSVAWMEDSGMHNLQTETLHQQYELVKRRTAPVGYSYGSHVMQYGDVGISKDNLDLYMGTNPAND
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Known secondary structure (DSSP)

S
TTT
BS

SSS





GGGGGSBT


SS

 .........290.........300.........310.........320.........330.........340.........350
Sequence NFVTNQRDADLVHFWEKYRKAPEGSARKTEAQKQVLEAMSHRLHIDNSVILVGKILFGISRGPEVLNKVR
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Known secondary structure (DSSP)



BS
TT

TTT


 .........360.........370.........380.........390.........400.........410.........420
Sequence SAGQPLVDDWNCLKNQVRAFERHCGSLSQYGIKHMRSFANICNAGIQMEQMEEAASQACTTLPTGPWSSL
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Known secondary structure (DSSP)
TTS
S
S



GGGTT


SS


SSSS

 ......
Sequence NRGFSA
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SS confidence





Known secondary structure (DSSP) TT




Download:PDB structure FASTA sequence

Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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