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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5nfvA_

Fold library idPDB HeaderMoleculeTitle
c5nfvA_2.50PDB header: hydrolaseChain: A: PDB Molecule: crispr-associated endonuclease cpf1;


Added to library: Sat Jun 17 09:05:53 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NASIYQEFVNKYSLSKTLRFELIPQGKTLENIKARGLILDDEKRAKDYKKAKQIIDKYHQFFIEEILSSV
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Known secondary structure (DSSP)


TTTT
BS



TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence CISEDLLQNYSDVYFKLKKSDDDNLQKDFKSAKDTIKKQISEYIKDSEKFKNLFNQNLIDAKKSDLILWL
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Known secondary structure (DSSP)


TT


TSTSSSGGGTS



 .........150.........160.........170.........180.........190.........200.........210
Sequence KQSKDNGIELFKANSDITDIDEALEIIKSFKGWTTYFKGFHENRKNVYSSNDIPTSIIYRIVDDNLPKFL
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Known secondary structure (DSSP) TT

SGGG
SS

STTT
GGGG

SS
TT
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence ENKAKYESLKDKAPEAINYEQIKKDLAEELTFDIDYKTSEVNQRVFSLDEVFEIANFNNYLNQSGITKFN
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Known secondary structure (DSSP)
GGGS
TTTTTS
BTTTTB




T
SGGGGGSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence TIIGGKFVNGENTKRKGINEYINLYSQQINDKTLKKYKMSVLFKQILSDTESKSFVIDKLEDDSDVVTTM
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Known secondary structure (DSSP)
B

TT
SS
B

T
GGGGGG







TT




SS






S
 .........360.........370.........380.........390.........400.........410.........420
Sequence QSFYEQIAAFKTVEEKSIKETLSLLFDDLKAQKLDLSKIYFKNDKSLTDLSQQVFDDYSVIGTAVLEYIT
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Known secondary structure (DSSP)
B
TT

BT
S
TTS
TTTS
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence QKTEKAKYLSLETIKLALEEFNKHRDIDKQCRFEEILANFAAIPMIFDEIAQNKDNLAQISIKYQNQGKK
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Known secondary structure (DSSP)





STS
SSS


TT

SS

 .........500.........510.........520.........530.........540.........550.........560
Sequence DLLQASAEDDVKAIKDLLDQTNNLLHKLKIFHISQSEDKANILDKDEHFYLVFEECYFELANIVPLYNKI
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Known secondary structure (DSSP) GGGSGGGTT







S





TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence RNYITQKPYSDEKFKLNFENSTLANGWDKNKEPDNTAILFIKDDKYYLGVMNKKNNKIFDDKAIKENKGE
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Known secondary structure (DSSP) TS







TT
TTTTS


GGG
TT
SS


TTST
 .........640.........650.........660.........670.........680.........690.........700
Sequence GYKKIVYKLLPGANKMLPKVFFSAKSIKFYNPSEDILRIRNHSTHTKNGSPQKGYEKFEFNIEDCRKFID
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Known secondary structure (DSSP)


SSTTT


TTT
SS



TTS





 .........710.........720.........730.........740.........750.........760.........770
Sequence FYKQSISKHPEWKDFGFRFSDTQRYNSIDEFYREVENQGYKLTFENISESYIDSVVNQGKLYLFQIYNKD
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Known secondary structure (DSSP)
TTGGGG





GGG
SSS
TTS
GG
 .........780.........790.........800.........810.........820.........830.........840
Sequence FSAYSKGRPNLHTLYWKALFDERNLQDVVYKLNGEAELFYRKQSIPKKITHPAKEAIANKNKDNPKKESV
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Known secondary structure (DSSP) GSTT

S



S
S
S




S



SB
TTS

S
TT
SSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence FEYDLIKDKRFTEDKFFFHCPITINFKSSGANKFNDEINLLLKEKANDVHILSIDRGERHLAYYTLVDGK
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Known secondary structure (DSSP)
SS
B
TTGGGGS
STTS



STGGG


SS
SS
TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence GNIIKQDTFNIIGNDRMKTNYHDKLAAIEKDRDSARKDWKKINNIKEMKEGYLSQVVHEIAKLVIEYNAI
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Known secondary structure (DSSP) S
SS

SS

TTT




T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VVFQDLKVEKQVYQKLEKMLIEKLNYLVFKDNEFDKTGGVLRAYQLTAPFETFKKMGKQTGIIYYVPAGF
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Known secondary structure (DSSP)


SB

TTS
TTSBTSTTB
B

S




SGGGTTTT

TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TSKICPVTGFVNQLYPKYESVSKSQEFFSKFDKICYNLDKGYFEFSFDYKNFGDKAAKGKWTIASFGSRL
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Known secondary structure (DSSP)
SSS
TTT











TSSTTTTGGGSS
SS




S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence INFRNDTREVYPTKELEKLLKDYSIEYGHGECIKAAICGESDKKFFAKLTSVLNTILQMANSKTDYLISP
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Known secondary structure (DSSP)




TT


TT

B



T





 .........1200.........1210.........1220.........1230.........1240.........1250........
Sequence VADVNGNFFDSRQAPKNMPQDADANGAYHIGLKGLMLLGRIKNNQEGKKLNLVIKNEEYFEFVQNRNN
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Known secondary structure (DSSP)
TTS
SSS

TTS
SS

TTS






S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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