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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5nfrI_

Fold library idPDB HeaderMoleculeTitle
c5nfrI_2.40PDB header: oxidoreductaseChain: I: PDB Molecule: malate dehydrogenase;


Added to library: Sat Feb 3 08:20:23 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MTKIALIGSGQIGAIVGELCLLENLGDLILYDVVPGIPQGKALDLKHFSTILGVNRNILGTNQIEDIKDA
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Known secondary structure (DSSP)



STT


SSTTT



S
GGGGTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence DIIVITAGVQRKEGMTREDLIGVNGKIMKSVAESVKLHCSKAFVICVSNPLDIMVNVFHKFSNLPHEKIC
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Known secondary structure (DSSP) S

S



TT

GGGG
TT


SS


GGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence GMAGILDTSRYCSLIADKLKVSAEDVNAVILGGHGDLMVPLQRYTSVNGVPLSEFVKKNMISQNEIQEII
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Known secondary structure (DSSP)

TTS
GGGS
SSTT
TTTTSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence QKTRNMGAEIIKLAKASAAFAPAAAITKMIKSYLYNENNLFTCAVYLNGHYNCSNLFVGSTAKINNKGAH
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Known secondary structure (DSSP) SS


TT

TTTT
 .........290.........300.........310...
Sequence PVEFPLTKEEQDLYTESIASVQSNTQKAFDLIK
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Known secondary structure (DSSP)





T


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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