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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ndzA_

Fold library idPDB HeaderMoleculeTitle
c5ndzA_3.60PDB header: membrane proteinChain: A: PDB Molecule: lysozyme,proteinase-activated receptor 2,soluble cytochrome


Added to library: Sat May 6 08:44:24 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SNIFEMLRIDEGLRLKIYKDYTIGIGHLLTKAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
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Known secondary structure (DSSP)





TT



SS

TTB

 .........80.........90.........100.........110.........120.........130.........140
Sequence NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVI
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Known secondary structure (DSSP) STTTS
T
TT
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence TTFRTGTWDAYIYEFFSVDEFSASVLTGKLTTVFLPIVYTIVFVVALPSNGMALWVFLFRTKKKAPAVIY
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Known secondary structure (DSSP)
SSS





TTSTT

S

 .........220.........230.........240.........250.........260.........270.........280
Sequence MANLALADLLSVIWFPLKIAYHIHGNNWIYGEALCNVLIGFFYANMYCSILFLTCLSVQRAWEIVNPMGH
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Known secondary structure (DSSP) TTTTS


S
S



 .........290.........300.........310.........320.........330.........340.........350
Sequence SRKKANIAIGISLAIWLLILLVTIPLYVVKQTIFIPALQITTCHDVLPEQLLVGDMFNYFLSLAIGVFLF
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Known secondary structure (DSSP) TTTSS

TTTTSSS
S
GGGTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence PAFLTASAYVLMIRALADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPD
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Known secondary structure (DSSP) TT

SS

SS
SSS
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence SPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLENSEKKRKRAIKLAVTVA
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Known secondary structure (DSSP) STT
TTTS
 .........500.........510.........520.........530.........540.........550......
Sequence AMYLICFTPSNLLLVVHYFLIKSQGQSHVYALYIVALCLSTLNSCIDPFVYYFVSHDFRDHAKNAL
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Known secondary structure (DSSP) TTTS

TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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