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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5nd1B_

Fold library idPDB HeaderMoleculeTitle
c5nd1B_3.70PDB header: virusChain: B: PDB Molecule: capsid protein;


Added to library: Sat Dec 2 08:17:10 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSAPSDQSQETRSPTSVGNTVAADVQTSVHDKPTGELKGSDGTGIHEATGLPIDKRGEVPTVQLERTAES
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Known secondary structure (DSSP)

S



S
S

S


S
GGGSS






B
S

S

B
SSTT
B


TT





B


 .........80.........90.........100.........110.........120.........130.........140
Sequence IAKMMDLLRSEKFTAAAADAKLMLQQEFQNIVACAKNAPQMTVNAGRFYLGCNSTTAIIAGDTADGYEIE
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Known secondary structure (DSSP)

S














S





TTSB

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence YSGKRIEGQCVVALEPLTITLSGSTSSTQDNSDSAKLFALAVSQVWGGASTVGIVAPMLQTVAQEQTFRA
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Known secondary structure (DSSP)





B
B



B
S




TTS
SSSSS

STT
SSSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence RVERDSGFQHHAALTTVVTTIVGWLMHVGDSAAKRSRDGWLDHQTDFAVKGMLTPHIASGMDWAGVQTYS
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Known secondary structure (DSSP) S
TT



SS
SSS



S


B

S

TT
S

 .........290.........300.........310.........320.........330.........340.........350
Sequence ASAMETTTDRVRADYAGRMVVHSTLRKQTLRSRGTGDTTETENSGRYLLALPKCDAGVAAAALALTWGKP
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Known secondary structure (DSSP) TS
SS



GGG




T

S

TT

TT
TTSSS


B

B

T
S

 .........360.........370.........380.........390.........400.........410.........420
Sequence KLGGAGHANLTAVMSEAGVGYITGVNGTRATPHADTVFGREELVYLLGFALRHMADAQEQVIRNVLAQVA
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Known secondary structure (DSSP)



STTTT


B
STTTS




S




GGGG
SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence SLFRPAACSAHEWMNVHGALMPKVSRPMNEPAFREVWNVANSSSDLQMIDRDKLNGEHFLRQLAQQITVN
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Known secondary structure (DSSP) TB




STT












TT
SSSSS


B

T
 .........500.........510.........520.........530.........540.........550.........560
Sequence CTGTAMAIYQAVLAGPTGITDGDTTRLQKDLYHHLFQYATTTYADGVQVMQANTRMANKMVPPVNALAAW
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Known secondary structure (DSSP) S



BSS
TSSTTSS
SSSTTB
S



B
 .........570.........580.........590.........600.........610.........620.........630
Sequence GLGSSMDSFTGPHCAYYFGLADAADGCFYSTTTGRTLSVYAVDVNHTSSDSYLAMAQLEPGLIATATGTG
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Known secondary structure (DSSP) SS

STTTS
SS
TT

B







B
SS









SSS

S
SS


SB

SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence STITTNVEAAGVVDGGLVTEGHVSLYTTISAQWNGLQREVYNWLLWHACKTEDSSHADIVGAEEVKSAVE
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Known secondary structure (DSSP)
B

TTTSTT

S

SSTTTTT







TTT
SS







 .........710.........720.........730.........740.........750.........760.........770
Sequence WLSSNSVEAHRFRSSAGLGATEAAGSPGRRAWRLHHYDGQIFSNVIADTERHPYMRRLYTPSELRDARND
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Known secondary structure (DSSP) S

TTSSSS
SSSTTTTTS

SS


S
SS
S


SS



SSS



TTTT

 .........780.........790.........800.........810.........820.........830.........840
Sequence LFVVDRIWKIVMAMRAQLMLISVQEDGGRHQHSKHYFGEAAAIGVMGHGFTNLFAYCASTVHGGREARLI
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Known secondary structure (DSSP)
-
SSSSTTSTT


SS

TB

T
SSS



B
 .........850.........860.........870.........880.........890.........900.........910
Sequence SNCTDTPMYKKEANDLVPPMMKVAQLSTLLAHGGAWCNAVNMGGNSTSIGLSILGDGTMPLQTVPWTVNE
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Known secondary structure (DSSP) SSSSSS
SS


SS
SS
STT
SSS
SS
SSSS


B

SS


 .........920.........930.........940.........950.........960.........970.........980
Sequence ITYLSEEGARHGIEAIIDTNGSVSVKVKMTMLEPRQRFCLYDDNKTSSYITAQESRTATYVTLKLGGTKN
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Known secondary structure (DSSP) SS

S


S
TT





TTS
S



STTTT





SS




S
 .........990.........1000.....
Sequence ANTISGLVAHDYKLATTILASTYDK
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Known secondary structure (DSSP)


















SSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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