PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5naaB_

Fold library id	PDB Header	Molecule	Title
c5naaB_	1.88	PDB header: protein transport	Chain: B: PDB Molecule: lipoprotein-releasing system transmembrane protein lolc;

Links to external resources
Added to library: Sat Nov 18 08:32:47 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M N G F E R E L Q N N I L G L M P Q A I L S S E H G S L N P Q Q L P E T A V K L D G V N R V A P I T T G D V V L Q S A R S V A V G V M L G I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T S S
S S S S S B
T T T S
G G G
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D P A Q K D P L T P Y L V N V K Q T D L E P G K Y N V I L G E Q L A S Q L G V N R G D Q I R V M V P S A S Q F T P M G R I P S Q R L F N V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T G G G S
G G G
T T S
T
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G T F A A N S E V D G Y E M L V N I E D A S R L M R Y P A G N I T G W R L W L D E P L K V D S L S Q Q K L P E G S K W Q D W R D R K G E L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G G T T T
T T
B S S S G G G T T S
T T G G G T

. . . . . . . .

Sequence Q A V R M E K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	N	G	F	E	R	E	L	Q	N	N	I	L	G	L	M	P	Q	A	I	L	S	S	E	H	G	S	L	N	P	Q	Q	L	P	E	T	A	V	K	L	D	G	V	N	R	V	A	P	I	T	T	G	D	V	V	L	Q	S	A	R	S	V	A	V	G	V	M	L	G	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T									T	T	T	S	S		S						S	S	S	S	B		T	T	T	S		G	G	G				T	T																	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	P	A	Q	K	D	P	L	T	P	Y	L	V	N	V	K	Q	T	D	L	E	P	G	K	Y	N	V	I	L	G	E	Q	L	A	S	Q	L	G	V	N	R	G	D	Q	I	R	V	M	V	P	S	A	S	Q	F	T	P	M	G	R	I	P	S	Q	R	L	F	N	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S			T	T	G	G	G			S			G	G	G			T	T	S														T			T	T															T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	T	F	A	A	N	S	E	V	D	G	Y	E	M	L	V	N	I	E	D	A	S	R	L	M	R	Y	P	A	G	N	I	T	G	W	R	L	W	L	D	E	P	L	K	V	D	S	L	S	Q	Q	K	L	P	E	G	S	K	W	Q	D	W	R	D	R	K	G	E	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	G	G	G	G	T													T	T			T	T		B	S							S	S	G	G	G					T	T	S				T	T						G	G	G	T
	.	.	.	.	.	.	.	.
Sequence	Q	A	V	R	M	E	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T