Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5n9jA_

Fold library idPDB HeaderMoleculeTitle
c5n9jA_3.40PDB header: transcriptionChain: A: PDB Molecule: mediator of rna polymerase ii transcription subunit 14;


Added to library: Sat May 20 08:21:06 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EPPAIPHITEGFYPLPEIVETFSHHVLQELVSLAEVLPSMSNVEKKKKILDWLLRSRAFTMRLLVLARWV
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)








SS


TTTS
G
 .........80.........90.........100.........110.........120.........130.........140
Sequence HLSPSVHRCIDVVAFLQGQKFCFQNLVHVLQDIRYQLSFARLRNSDLVTALDILSTGTSLRLANAPTSKL
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) GG





TTS

 .........150.........160.........170.........180.........190.........200.........210
Sequence YMLSESPLSTKQILQTLHALNMLIRIRLSLYEIIPTPFQHFTIANGRCTFTVPNEFSVSLTTNSQDPKST
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)



S



S


GGG
S
SSS


SSS




TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence GISFQWIVVDFQFHLPDFSSTPAKYRVFIELHLNEEIAAAFVLQKPILPLIYNILHKFCLYQRLNLLSQQ
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TTT





S

T

 .........290.........300.........310.........320.........330.........340.........350
Sequence TFQLSRESWLGHLRGVYDEKPPRLRLYYWPQLNVGHYIHIFVNTQPISAFERTLSSKRSSCEYDHFLLLV
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) SS
GGGTTTT

S









BTTB
S
S

 .........360.........370.........380.........390.........400.........410.........420
Sequence EWHHDGIVEHVPLDDHMDAQHLLLLITQKHAQLILEQIRKELHPNIFSEHVGGGLKIHVFDNEIIVKVNS
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) TT


SS

S
TTS
TTTT
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence VTGRLVLSSSASPLSPPRHLRAAEKNIALNTQPPAQILNRLYFFCIQTQLLEVAQCAELHAVQGYYSFPY
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) TT

SSSSSS

TTSS
TTT

SS

TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence LTFSKGKWRKDGDSLWVLAYNVESNSWSVRLLNAAGQTLYTQDVHTTKGTLSIESFSRLSYLLEVQILLF
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)
GGGB
GGG
TTTT
SSS



TT


 ......
Sequence NVQTAC
Predicted secondary structure


SS confidence





Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D