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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5my5A_

Fold library idPDB HeaderMoleculeTitle
c5my5A_1.40PDB header: transport proteinChain: A: PDB Molecule: abc transporter periplasmic substrate-binding protein;


Added to library: Sat Aug 5 08:28:15 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence APVLMMATTTSTDNTGLLDDLAPQFTKDTGIELRWTAVGTGKALKMGENCDVDILLVHAPAAEKAFVDAG
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Known secondary structure (DSSP)

TS

TT

S

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence FGTARTQLMYNDFVIIGPAADPAGVKGMTVAAALGKIAADNAVFVSRGDNSGTHKMEKSLWKQIEGPSPE
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Known secondary structure (DSSP) SBS

TT
TT

TT

TT



S

TTSSS


T
 .........150.........160.........170.........180.........190.........200.........210
Sequence KEAWYVQTGQGMLRTINVAAEKGGYTMTDRGTYIKYEASMDGNPPLKILVEGDKILFNQYSAIPVNPAHC
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Known secondary structure (DSSP) T
TT

S
T
TTT

S


GGGB
TTTS
 .........220.........230.........240.........250
Sequence PKVKKDLADKFVNWMASPATQKTIGDFKLMGKALFTPNAE
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Known secondary structure (DSSP) TT

S
TT





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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