PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5mmhD_

Fold library id	PDB Header	Molecule	Title
c5mmhD_	2.20	PDB header: transcription	Chain: D: PDB Molecule: hth-type transcriptional activator ampr;

Links to external resources
Added to library: Fri Feb 10 03:09:46 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y R D V L T V G A V G T F T V G W L L P R L E D F Q A R H P F I D L R L S T H N N R V D I A A E G L D Y A I R F G G G A W H G T E A L A L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T
S
T
S
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E A P L T V L C C P E V A A Q L H S P A D L L Q H T L L R S Y R A D E W P L W F Q A A G L P A R S I V F D T S L A M L E A A R Q G V G V A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S G G G G G G S
S
T T T T T
S S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . .

Sequence A P A A M F A R Q L A S E S I R R P F A T E V S T G S Y W L T R L Q S R G E T S A M L A F R G W L L E M A A V E A R G R L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S T T S S B
B
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	R	D	V	L	T	V	G	A	V	G	T	F	T	V	G	W	L	L	P	R	L	E	D	F	Q	A	R	H	P	F	I	D	L	R	L	S	T	H	N	N	R	V	D	I	A	A	E	G	L	D	Y	A	I	R	F	G	G	G	A	W	H	G	T	E	A	L	A	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T											S	T	T										S								T		S								S			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	A	P	L	T	V	L	C	C	P	E	V	A	A	Q	L	H	S	P	A	D	L	L	Q	H	T	L	L	R	S	Y	R	A	D	E	W	P	L	W	F	Q	A	A	G	L	P	A	R	S	I	V	F	D	T	S	L	A	M	L	E	A	A	R	Q	G	V	G	V	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								B									S	S	G	G	G	G	G	G	S						S		T	T								T	T	T									S	S										T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Sequence	A	P	A	A	M	F	A	R	Q	L	A	S	E	S	I	R	R	P	F	A	T	E	V	S	T	G	S	Y	W	L	T	R	L	Q	S	R	G	E	T	S	A	M	L	A	F	R	G	W	L	L	E	M	A	A	V	E	A	R	G	R	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	S						T	T	S	S	B							B											T	T	S