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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5mm2B_

Fold library idPDB HeaderMoleculeTitle
c5mm2B_2.70PDB header: virusChain: B: PDB Molecule: capsid protein vp4b;


Added to library: Sat Dec 23 08:30:56 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DNEVTAEGGKLVQELVYDHSAIPVAPVVETQAEQPEVPVSLVATRKNDTGHLATKWYDFAKISLSNPANM
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Known secondary structure (DSSP)










GGGS
S
SSSS
SS

TT







SSTTS




S
TTGGG







S
 .........80.........90.........100.........110.........120.........130.........140
Sequence NWTTLTIDPYNNVTLSRDGESMVLPWRRNVWTTGSKSIGYIRTMVAQINIPRPPQISGVLEVKDSINNSS
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Known secondary structure (DSSP)


SSS
TTS

SSS
TTSGGGSBSB
B
SSSS
B





TTSSSSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence ISLVEFGGKVEIPIIPKVMNGLATTASLPRHRLNPWMRTAESKVELQYRIIAFNRTSDIADLNVSVLLRP
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Known secondary structure (DSSP) TT


BSTTSS


SS

T
S

BTTS


SS






 .........220.........230.........240.
Sequence GDSQFQLPMKPDNNVDTRHFELVEALMYHYD
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Known secondary structure (DSSP) TT


B




S


S
SGGGTTTTT



Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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