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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5mgaA_

Fold library idPDB HeaderMoleculeTitle
c5mgaA_3.00PDB header: hydrolaseChain: A: PDB Molecule: crispr-associated endonuclease cpf1;


Added to library: Sat Jun 24 08:34:36 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IYQEFVNKYSLSKTLRFELIPQGKTLENIKARGLILDDEKRAKDYKKAKQIIDKYHQFFIEEILSSVCIS
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Known secondary structure (DSSP)
TTS
BS
S

TTTT
-
 .........80.........90.........100.........110.........120.........130.........140
Sequence EDLLQNYSDVYFKLKKSDDDNLQKDFKSAKDTIKKQISEYIKDSEKFKNLFNQNLIDAKKGQESDLILWL
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Known secondary structure (DSSP)
TTTT


SSTTTTSSSGGGTT

SSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence KQSKDNGIELFKANSDITDIDEALEIIKSFKGWTTYFKGFHENRKNVYSSNDIPTSIIYRIVDDNLPKFL
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Known secondary structure (DSSP)




TT




BTTB
STTTT
GGGGS
SSS
TTSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence ENKAKYESLKDKAPYEQIKKDLAEELTFDDDYKNQRVFSLDEVFEIANFNNYLNQSGITKFNTIIGGKFV
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Known secondary structure (DSSP) TT


GGGGGG







SS



S


TTTTTSGGGGGGSSS
B

 .........290.........300.........310.........320.........330.........340.........350
Sequence NGENTKRKGINEYINLYSQNDKTLKKYKMSVLFKQILSDTESKSFVIDKLEDDSDVVTTMQSFYEQIAAF
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Known secondary structure (DSSP) SSS


B






GGGG







TT





S






SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence KTKETLSLLFDDLKKSLTDLSQQVFDDYKEQELIAKKTEKAKYLSLETILIDKQCRFEEILANFAAIPMI
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Known secondary structure (DSSP)


TT


TTSS



TT




TT



TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence FDEIAQNKDNLAQISIKYQNQGKKDLLQASAEDDVKAIKDLLDQTNNLLHKLKIFHISQSEDKADEHFYL
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Known secondary structure (DSSP) STTSSSSTTTT


TT


SSSSSTTSTTTT








TTTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence VFEECYFELANIVPLYNKIRNYITQKPYSDEKFKLNFENSTLANGWDKNKEPDNTAILFIKDDKYYLGVM
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Known secondary structure (DSSP) TTTTTT








TT
TTTTS

BGGG
TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence NKKNNKIFDDKAIKENKGEGYKKIVYKLLPGANKMLPKVFFSAKSIKFYNPSEDILRIRNHSTHTKNGSP
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Known secondary structure (DSSP)
GGGTTTTSTBSS


TSTTT


SS




-


 .........640.........650.........660.........670.........680.........690.........700
Sequence QKGYEKFEFNIEDCRKFIDFYKQSISKHPEWKDFGFRFSDTQRYNSIDEFYREVENQGYKLTFENISESY
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Known secondary structure (DSSP)

SSS





TTTGGG





TTT
SSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence IDSVVNQGKLYLFQIYNKDFSAYSKGRPNLHTLYWKALFDERNLQDVVYKLNGEAELFYRKQSIPKKIIA
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Known secondary structure (DSSP) TTS
GGGSTT

S


TT
S
S
S




S


B

 .........780.........790.........800.........810.........820.........830.........840
Sequence NKNKDNPKKESVFEYDLIKDKRFTEDKFFFHCPITINFKSSGANKFNDEINLLLKEKANDVHILSIDRGE
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Known secondary structure (DSSP)
SSSSS



SS
SS

BTTGGGGS
STT





TTTS


S
 .........850.........860.........870.........880.........890.........900.........910
Sequence RHLAYYTLVDGKGNIIKQDTFNIIGNYHDKLAAIEKDRDSARKDWKKINNIKEMKEGYLSQVVHEIAKLV
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Known secondary structure (DSSP) SSS

TTS
SSS


TT





 .........920.........930.........940.........950.........960.........970.........980
Sequence IEYNAIVVFEDLNFGVEKQVYQKLEKMLIEKLNYLVFKDNEFDKTGGVLRAYQLTAPFETFKKMGKQTGI
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Known secondary structure (DSSP) T








SSB

SSS
TTSTTSTTS
B

S




STTT
STT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence IYYVPAGFTSKICPVTGFVNQLYPVSKSQEFFSKFDKICYNLDKGYFEFSFDYKNFGDKGKWTIASFGSR
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Known secondary structure (DSSP)

SS
SSS
TTT



SS





TTSS
TTTT


SSS









 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LINNHNWDTREVYPTKELEKLLKDYGECIKAICGESDKKFFAKLTSVLNTILQMRNSKELDYLISPVADV
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Known secondary structure (DSSP)




SS








S



S
SSSSSSTTTT


B




B
B
S

BT
 .........1130.........1140.........1150.........1160.........1170.........1180..
Sequence NGNFFDSRQAPKNMPQDADANGAYHIGLKGLMLLGRIKNNQEKLNLVIKNEEYFEFVQNRNN
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Known secondary structure (DSSP) TTB

BGGG

TTS
SST









TS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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