PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5m4sA_

Fold library id	PDB Header	Molecule	Title
c5m4sA_	2.38	PDB header: transcription	Chain: A: PDB Molecule: transcription initiation factor iia subunit 2,transcription

Links to external resources
Added to library: Sat Dec 2 08:17:35 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A Y Q L Y R N T T L G N S L Q E S L D E L I Q S Q Q I T P Q L A L Q V L L Q F D K A I N A A L A Q R V R N R V N F R G S L N T Y R F C D N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G S S T T S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W T F V L N D V E V R E V T E L I K V D K V K I V A C D G K N T A N S A N T N T V P K L Y R S V I E D V I N D V R D I F L D D G V D E Q V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . .

Sequence M E L K T L W E N K L M Q S R A V D G E L F D T E N V V V C Q Y D K I H R S K N K W K F H L K D G I M N L N G R D Y I F S K A I G D A E W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S
S S
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	Y	Q	L	Y	R	N	T	T	L	G	N	S	L	Q	E	S	L	D	E	L	I	Q	S	Q	Q	I	T	P	Q	L	A	L	Q	V	L	L	Q	F	D	K	A	I	N	A	A	L	A	Q	R	V	R	N	R	V	N	F	R	G	S	L	N	T	Y	R	F	C	D	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	G	S	S																T	T	S	S																																									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	T	F	V	L	N	D	V	E	V	R	E	V	T	E	L	I	K	V	D	K	V	K	I	V	A	C	D	G	K	N	T	A	N	S	A	N	T	N	T	V	P	K	L	Y	R	S	V	I	E	D	V	I	N	D	V	R	D	I	F	L	D	D	G	V	D	E	Q	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	S																S	S											S																					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Sequence	M	E	L	K	T	L	W	E	N	K	L	M	Q	S	R	A	V	D	G	E	L	F	D	T	E	N	V	V	V	C	Q	Y	D	K	I	H	R	S	K	N	K	W	K	F	H	L	K	D	G	I	M	N	L	N	G	R	D	Y	I	F	S	K	A	I	G	D	A	E	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T		T	T	S		S	S																	T	T														T	T