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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5m41A_

Fold library idPDB HeaderMoleculeTitle
c5m41A_2.10PDB header: toxinChain: A: PDB Molecule: nigritoxine;


Added to library: Sat Dec 9 08:28:00 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LGGINHSAVANRYRNLTKEAQQNLYQFAIIEVLSQIREERPDKNLDAYNALIGKVTTVDIYTYGATNMFF
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Known secondary structure (DSSP)




TS
TSSS










SSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence MPDARGSKTGILVNLNSPDKPYTNIQQPSDFNNINDESFRQNFTSWEKRDGTGWNLGYFNQKTPRTINIS
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Known secondary structure (DSSP) SSTT
S
TT
SS
S
STT


TTS
GGG



GGGGGT


GG
 .........150.........160.........170.........180.........190.........200.........210
Sequence ELSKILVERLDYHVSQENNDDQILSTLLLDVLPRSAKGAAREPLGVSASGIPFQLEFTFEGFTSPTDELR
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Known secondary structure (DSSP) GSS
TTTSTTSTT



TT


 .........220.........230.........240.........250.........260.........270.........280
Sequence AIQSPFSHLAKYFDLLVASTNGVEYSQEQAENIGAWIDSGTQLLMSASGIGAAVSVIQGAAGLTADAIEG
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Known secondary structure (DSSP) TTTSTT
T








S



STTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence KEIDPLDVISLSLAAIPGGKIVAKLSKVSKNLGQVVRGGISIAETGVDIVGSSRDLIEGFKKGNFTDIIN
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Known secondary structure (DSSP) TSS
TTSTTT
GGG

TTTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence GLVSVASSSASGRPGKSKIGNAIKKGNPDAPLPTRPTYRNHEGEVRPIPTAQTKSFFERVAIVRREGLSG
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Known secondary structure (DSSP) TT
SSS


TSTT







TTS



S

S
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence RGAIGLDLTAAQKRGAELSGMGGTISKSNPNGNVSQVYINEAEGIEKNITYRKVPVPNEPGNFENRLQES
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Known secondary structure (DSSP)
SSS




TT

TT
SSS


SS
TT



TTTT
TTSTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence FLDNNGQTKWRDFPYAGEEFDFRLQHKDDFNNIGDLGVGKQGIIAVNNPYSFVHHSHTFEQKGISNNHLT
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Known secondary structure (DSSP)
TTS

SSTTT

S

STT


TT


SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence LESNAFLTYIEGKKTGDFENKYGNEMEWLVRKFKTKKNDFDLKDIPDNIHFRTDREKGDHSLTTYTLQDF
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Known secondary structure (DSSP)
TS
SS
TTS
GGGSS


SSS

STT
TT

 .........640.........650.........660.........670.........680.........690.........700
Sequence ITVVENAPTKMRKVKNDEFALNNIVESMRATAKNMGASPDTLFLDVASTNYMTQLMGQVLTNGRQELNLQ
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Known secondary structure (DSSP)

GGGGGGGG
TT

GGG
GGGTT
S


 .........710..
Sequence GLSNAAQKLRNG
Predicted secondary structure

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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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