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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5m30B_

Fold library idPDB HeaderMoleculeTitle
c5m30B_2.60PDB header: secretion systemChain: B: PDB Molecule: type vi secretion protein;


Added to library: Sat Jun 24 08:29:14 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FQQQAAWDVHLADSVARMGLAHPWGVVAAEFDDSLLPLSRLNATRLIVRFPDGTLIDTERADNLPPVCDL
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Known secondary structure (DSSP)
TTT
S


GGGGGGT
TTS
TTTT





G
 .........80.........90.........100.........110.........120.........130.........140
Sequence STVSDRSLVDIVLALPLLNANGGNLDNGSESERPRRWKSERAVLRHNLTLRMAHQENAAWLTCPVTRLVR
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Known secondary structure (DSSP) GGGTT
S


SSS

B

SS

SS

S



TTS

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence DAQGQWCRDPRFIPPLLTLSASPSLMTELLELLHHLQARRQRLMSMRRENNADFAVADVSLFWLLNALNS
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Known secondary structure (DSSP)
TT


TT



BSSSTT
TS







TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence AEPVLKELLDMPYRHPELLYRELARLAGSLLTFSLEHNVDAVPAYHHETPENVFPPLLSLLNRLLEASLP
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Known secondary structure (DSSP) S

S
GGG
SSS
GGGS



SS
GGGTS


 .........290.........300.........310.........320.........330.........340.........350
Sequence SRVVFIELKQKGVMWEGALHDARLREGADFWLSVRSSMPGHELQTKFPQLCKAGSPDDVSEVVNVALSGV
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Known secondary structure (DSSP)



SS


T

SS


SS


SS
SS

TT
 .........360.........370.........380.........390.........400.....
Sequence IIRPVTHVLRLENQYFALDLSTDAARAMLDAGRCTFYTPASLGDVKLELFAVLRT
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Known secondary structure (DSSP)
S



SS


TT

GGG
S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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