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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5m0rF_

Fold library idPDB HeaderMoleculeTitle
c5m0rF_8.20PDB header: hydrolaseChain: F: PDB Molecule: integrase;


Added to library: Thu Feb 9 21:39:46 2017
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence NIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKKRGIDHWQVDYTHYEDKIILVWVETN
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Known secondary structure (DSSP)






S




SS
SSS
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SGLIYAERVKGETGQEFRVQTMKWYAMFAPKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWNPQSQAL
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Known secondary structure (DSSP) S

S
S



SBB
S
STT
B

BS



 .........150.........160.........170.........180.........190.........200.........210
Sequence VERTHQTLKNTLEKLIPMFNAFESALAGTLITLNIKRKGGLGTSPMDIFIFNKEQQRIQQQSKSKQEKIR
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Known secondary structure (DSSP) GGG
SSTT

BTTTB
S



 .........220.........230.........240.........250.........260......
Sequence FCYYRTRKRGHPGEWQGPTQVLWGGDGAIVVKDRGTDRYLVIANKDVKFIPPPKEI
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Known secondary structure (DSSP)

TT




B

SSB
BTTTT

BGGG


S
TT


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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