Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5lq8A_

Fold library idPDB HeaderMoleculeTitle
c5lq8A_1.52PDB header: periplasmic binding proteinChain: A: PDB Molecule: putative phosphonate binding protein for abc transporter;


Added to library: Sat Dec 9 08:28:07 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NPKVLKVGAIPDQNQDVLDKRFNLFSKELSKQLDVEVKYIPVINYIAAVTGFRTKDLDLVWFGGLSGVQA
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)
TT


S
TS


SSTTS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence RLQTPNSIVIAQRDIDKEFKSVFVVNKNLELNSISNIKGLKKLKNLRFTFGSENSTSGRLMPEYFLNQAG
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) STT

GGGGSB
GGG




SSGGGGGGGTTS
S
TT
TTTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VEIKHFKGKKAGFSGSHDATIALVNSGAFDAGALNKQVWENNLKNNPKRTSNLELFWITPEYVDYHWVAQ
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)

GGGSGGG


SSTSSS
GGGSTT


B



 .........220.........230.........240.........250.........260.........270..
Sequence GDLENRFGEGFTKELKSVILNLDIKQKSHKQILDMFNAKRFIKAESKQYKNIEEIGRKLNKI
Predicted secondary structure



















SS confidence





























































Known secondary structure (DSSP) S
T
TTT

TTSTT
S



GGGGTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D