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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5lq3F_

Fold library idPDB HeaderMoleculeTitle
c5lq3F_3.55PDB header: transport proteinChain: F: PDB Molecule: cmeb;


Added to library: Sat Aug 12 09:12:52 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTVKVSATYTGADAQTIASTVASPIEDAI
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Known secondary structure (DSSP)
T
TS
B
SS
S
S


SS

T
 .........80.........90.........100.........110.........120.........130.........140
Sequence NGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAA
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Known secondary structure (DSSP) TT
TTTTS
TT

TTSS
TT






 .........150.........160.........170.........180.........190.........200.........210
Sequence ISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVN
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Known secondary structure (DSSP) SSSSS
TTTSTTTT
SS

TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence DQNAQYATGKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQ
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Known secondary structure (DSSP) S

S
SS
SS





S

ST

TTS
GGGT
S


SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence GRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKEVVKTFVEAL
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Known secondary structure (DSSP) TT

SS

TTS

SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence ILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALILAIGIVVDDAIIVVENIDR
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Known secondary structure (DSSP)
SSTT

B
 .........430.........440.........450.........460.........470.........480.........490
Sequence ILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALT
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Known secondary structure (DSSP) TT
SS

T

SST
 .........500.........510.........520.........530.........540.........550.........560
Sequence LTPSLCALFLRRNEGEPFKFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNS
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Known secondary structure (DSSP) T

S





TTS
TTS
B
 .........570.........580.........590.........600.........610.........620.........630
Sequence LVPEEDQGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQ
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Known secondary structure (DSSP) SS




S

TT

TTSTTT

TTT



TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence DWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNKSGKSYDEIQKDVNKLVAA
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Known secondary structure (DSSP)
TTT

S
TSS
SSS

SSBTTBSSSS
TT


 .........710.........720.........730.........740.........750.........760.........770
Sequence ANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDVFNTMNATIGTYYVNDFSMLGKNFQVNIRAK
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Known secondary structure (DSSP) TTSSS





TT

TS
TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence GDFRNTQDALKNIFVRSNDGKMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQ
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Known secondary structure (DSSP)




STTTGGG

TTS

SSSSB
TTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence VAKETLGDDYSIAWSGSAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLL
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Known secondary structure (DSSP) S
TT

TS
TTT
TTTGGG
 .........920.........930.........940.........950.........960.........970.........980
Sequence VYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIMTSLAFTFG
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Known secondary structure (DSSP) TT

B
TS


TT
 .........990.........1000.........1010.........1020.........1030.....
Sequence VLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEWLDKKR
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Known secondary structure (DSSP) ST

STTTTTTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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