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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5lnkd_

Fold library idPDB HeaderMoleculeTitle
c5lnkd_3.90PDB header: oxidoreductaseChain: D: PDB Molecule:


Added to library: Thu Feb 9 14:46:28 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LHHAVIPHGKGGRSSVSGIVATVFGATGFLGRYLVNHLGRMGSQVIVPYRCEPYDTMHLRPMGDLGQIIF
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Known secondary structure (DSSP)

SS



SSSSSS


S



BSS
SSTTT



S
SSGGGGGGGGS
SS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence MDWNGRDKDSIRRAVEHSNVVINLVGREWETKNFDFEDVFVKIPQAIAQVSKEAGVEKFIHISHLNADIK
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Known secondary structure (DSSP)

TTSSSS
S





SS

TT
BTTTT





TT

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence SSSKYLRNKAVGEKEVRETFPEATIIKPADIFGREDRFLNYFANIRWFGGVPLISLGKKTVKQPVYIVDV
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Known secondary structure (DSSP) SS
SS

S

S
SS
SSTTSTT

SS
SS
S


B

 .........220.........230.........240.........250.........260.........270.........280
Sequence TKGIINAIKDPDARGKTFAFVGPNRYLLFDLVQYVFAVAHRPPWTTRDKVERIHTTDRTLPHLPGLEDLG
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Known secondary structure (DSSP) STT
TT




SS

B
TTT





S





S
S

SGGG
 .........290.........300.........310....
Sequence VQATPLELKAIEVLRRHRTYRWLSSEIEDVQPAK
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Known secondary structure (DSSP)




S

S

S










TT


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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