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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5lm7A_

Fold library idPDB HeaderMoleculeTitle
c5lm7A_3.35PDB header: transcriptionChain: A: PDB Molecule: transcription termination/antitermination protein nusa;


Added to library: Sat Apr 15 08:51:10 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GAMNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEV
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Known secondary structure (DSSP)



S


SSS
SSS


TTT

B
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEII
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Known secondary structure (DSSP) S
TTS
B
TTGGGGGTT


TT



B





STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIEL
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Known secondary structure (DSSP) TT
STT
TTTS
SS



TT




SSS


SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence FRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDD
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Known secondary structure (DSSP) TT
TTSS
SSS
SS
SS

STTTTS


S
 .........290.........300.........310.........320.........330.........340.........350
Sequence NPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH
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Known secondary structure (DSSP) STTS

S

TTTT



GGGTS


 .........360.........370.........380.........390.........400.........410.........420
Sequence QAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA
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Known secondary structure (DSSP) T

TTS
S


SSS
SS
 ........
Sequence QAQEESLG
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SS confidence







Known secondary structure (DSSP) SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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