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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ldwN_

Fold library idPDB HeaderMoleculeTitle
c5ldwN_4.27PDB header: oxidoreductaseChain: N: PDB Molecule: nadh-ubiquinone oxidoreductase chain 2;


Added to library: Thu Feb 9 11:58:53 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NPIIFIIILLTIMLGTIIVMISSHWLLVWIGFEMNMLAIIPIMMKNHNPRATEASTKYFLTQSTASMLLM
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Known secondary structure (DSSP)

SS


TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence MAVIINLMFSGQWTVMKLFNPMASMLMTMALAMKLGMAPFHFWVPEVTQGIPLSSGLILLTWQKLAPMSV
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Known secondary structure (DSSP) SS



SS



TTTT
TTT
TTT
SSST
 .........150.........160.........170.........180.........190.........200.........210
Sequence LYQIFPSINLNLILTLSVLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMTLLNLIIYIIM
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Known secondary structure (DSSP) TTS
SSS
GGGTSTTTT

BTTS
STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence TSTMFTMFMANSTTTTLSLSHTWNKTPIMTVLILATLLSMGGLPPLSGFMPKWMIIQEMTKNNSIILPTF
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Known secondary structure (DSSP) TTTT

BTTSSSS
SSS

TTSTTTTT

 .........290.........300.........310.........320.........330.........340....
Sequence MAITALLNLYFYMRLTYSTTLTMFPSTNNMKMKWQFPLMKKMTFLPTMVVLSTMMLPLTPMLSV
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Known secondary structure (DSSP) GGGTSS





S



S





SSTTT

TTT
SST


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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