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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ldwJ_

Fold library idPDB HeaderMoleculeTitle
c5ldwJ_4.27PDB header: oxidoreductaseChain: J: PDB Molecule: nadh-ubiquinone oxidoreductase chain 6;


Added to library: Thu Feb 9 18:27:15 2017
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence MLYIVFILSVIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIYLGGMMVVFGYT
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Known secondary structure (DSSP)


SS

TT

TTTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence TAMATEQYPEIWLSNKAVLGAFVTGLLMEFFMVYYVLKDKEVEVVFEFNGLGDWVIYDTGDSGFFSEEAM
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Known secondary structure (DSSP) S






SSSSTTTTTSSS



SSSS




SSTTT






TT
STT
 .........150.........160.........170.
Sequence GIAALYSYGTWLVIVTGWSLLIGVVVIMEIT
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Known secondary structure (DSSP) TT


SSS


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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