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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5l5cA_

Fold library idPDB HeaderMoleculeTitle
c5l5cA_6.00PDB header: signaling proteinChain: A: PDB Molecule: plexin-a1;


Added to library: Sat Jul 9 08:46:56 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PAFRTFVASDWGLTHLVVHEQTGEVYVGAVNRIYKLSGNLTLLRAHVTGPVEDNEKCYPPPSVQSCPHGL
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Known secondary structure (DSSP)



SSS

TTT

SS
TT





TT
SS
TTTS

SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence GSTDNVNKLLLLDYAANRLLACGSASQGICQFLRLDDLFKLGEPHHRKEHYLSSVREAGSMAGVLIAGPP
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Known secondary structure (DSSP)






TTTT



SSSS


TTT




SSSTT






SSS



T
 .........150.........160.........170.........180.........190.........200.........210
Sequence GQGQAKLFVGTPIDGKSEYFPTLSSRRLMANEEDADMFGFVYQDEFVSSQLKIPSDTLSKFPAFDIYYVY
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Known secondary structure (DSSP) TSS




TT
TTT

S

S
SS
TTTT
BSS

SS

S


STT


 .........220.........230.........240.........250.........260.........270.........280
Sequence SFRSEQFVYYLTLQLDTQLAGEHFFTSKIVRLCVNDPKFYSYVEFPIGCEQAGVEYRLVQDAYLSRPGQA
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Known secondary structure (DSSP) TT

S







TT
TT
TT
SSS


 .........290.........300.........310.........320.........330.........340.........350
Sequence LAKQLGLAEDEEVLFTVFAQGQKNRVKPPKESALCLFTLRAIKEKIKERIQSCYRGEGKLSLPWLLNKEL
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Known secondary structure (DSSP) T

TT

BS

SSS

S
TTT
SB


TTT
SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence GCINSPLQIDDDFCGQDFNQPLGGTVTIEGTPLFVDKEDGLTAVAAYDYQGRTVVFAGTRSGRIRKILVD
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Known secondary structure (DSSP) B








TT



SSS
S


SS




SSS
TTTTS

 .........430.........440.........450.........460.........470.........480.........490
Sequence LANPSGRPALAYESVVAQEGNPILRDLVLSPNRQYLYAMTEKQVTQVPVESCVQYTSCELCLGSRDPHCG
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Known secondary structure (DSSP) SSSSSSS
SSTTT


SSSSSSS

GGG

S

TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence WCVLHSICSRQDACERAEEPQRFASDLLQCVQLTVQPRNVSVTMSQVPLVLQAWNVPDLSAGVNCSFEDF
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Known secondary structure (DSSP) GGGT
GGGSTTTTSTTS
SGGGS
SS
TT

S
S



TT
TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence TETESILEDGRIHCHSPSAREVAPITQGQGDQRVVKLYLKSKETGKKFASVDFVFYNCSVHQSCLACVNG
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Known secondary structure (DSSP)
TT


TTTTTTTT


STT

SSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence SFPCHWCKYRHVCTNNAADCAFLEGRVNMSEDCPQILPSTHIYVPVGVVKPITLAARNLPQPQSGQRGYE
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Known secondary structure (DSSP) SS

TTTTS
GGGSSSGGG
SGGGS
B



S
BT


BS




TT


 .........710.........720.........730.........740.........750.........760.........770
Sequence CLFHIPGSPARVTALRFNSSSLQCQNSSYSYEGNDVSDLPVNLSVVWNGNFVIDNPQNIQAHLYKCPALR
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Known secondary structure (DSSP)
SS

B


BTT
B

S
S

STTT
B
SS


TTSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence QSCGLCLKADPRFECGWCVAERRCSLRHHCPADSPASWMHAHHGSSRCTDPKILKLSPETGPRQGGTRLT
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Known secondary structure (DSSP)
STTS
SSS


TTTT

STTS

SSTT


SSS



S



STT


 .........850.........860.........870.........880.........890.........900.........910
Sequence ITGENLGLRFEDVRLGVHVGKVLCSPVESEYISAEQIVCEIGDASTLRAHDALVEVCVRDCSLHYRALSP
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Known secondary structure (DSSP) SS

SSTTT
TT
STT
BTTT


TT


S
SSS

SSS
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence KRFTFVTPTFYRVSPSRGPLSGGTWIGIEGSHLNAGSDVAVSIGGRPCSFSWRNSREIRCLTPPGHTPGS
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Known secondary structure (DSSP) S


S
STT


STT
SS
TT

SS



SSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence APIVININRAQLSNPEVKYNYTEDPTILRIDPEWSINSGGTLLTVTGTNLATVREPRIRAKYGGIERENS
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Known secondary structure (DSSP)
TT

SSS



SSSTT


SGGG
SS
TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence CMVYNDTTMVCRAPSIDNPKRSPPELGERPDEIGFIMDNVRTLLVLNSSSFLYYPDPVLEPLSSPLILKG
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Known secondary structure (DSSP)
SSS





SS



TT
B

S
TT
GGGTS
SS














 .........1130.........1140.........1150.........1160.........1170.
Sequence RNLLPPAPGNSRLNYTVLIGSTPCILTVSETQLLCEAPNKVTVRAGGFEFS
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Known secondary structure (DSSP) S
SS


SSS



TT



SS




SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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