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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5l4kS_

Fold library idPDB HeaderMoleculeTitle
c5l4kS_4.50PDB header: structural proteinChain: S: PDB Molecule: 26s proteasome non-atpase regulatory subunit 3;


Added to library: Thu Feb 9 20:29:53 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GGGSTGEADGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVL
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Known secondary structure (DSSP)
TTSTTTTTTTTTTTSSSTSGGGTTTTGGGGS
SS
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence YKAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKRYKE
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Known secondary structure (DSSP)
TTTTTTS
SS
SSTTT
S




S


S

SSTTTS

STTTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence AQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNL
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Known secondary structure (DSSP) TTS
SSS

ST
 .........220.........230.........240.........250.........260.........270.........280
Sequence LLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVG
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Known secondary structure (DSSP) TT
S


SS

TT
TTS
SS

 .........290.........300.........310.........320.........330.........340.........350
Sequence FKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYT
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Known secondary structure (DSSP) T



GGGGS
TGGGTTST
STTSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence LIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEM
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Known secondary structure (DSSP) GGG
STT
S
TTSS
TTTT


 .........430.........440.........450.........460.........470.........480.........490
Sequence IDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSF
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Known secondary structure (DSSP)

STTSSTS
SS

T
 .
Sequence P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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