PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5kf6B_

Fold library id	PDB Header	Molecule	Title
c5kf6B_	1.70	PDB header: oxidoreductase	Chain: B: PDB Molecule: bifunctional protein puta;

Links to external resources
Added to library: Thu Feb 9 18:17:38 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A P A P F A D F A P P V R P Q S T L R R A I T A A Y R R P E T E C L P P L V E A A T Q S K E I R D A A A S T A R K L I E A L R G K G V E G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S
S S
T T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V Q E Y S L S S Q E G V A L M C L A E A L L R I P D T A T R D A L I R D K I A D G N W R S L F V N A A T W G L V V T G K L T S T V N D R S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T G G G S
T T T T S
S S B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A A A L T R L I S R C G E P V I R R G V D M A M R M M G E Q F V T G E T I R E A L K R S K E L E E K G F S Y S Y D M L G E A A T T A A D A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S B S S T S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R Y Y R D Y E S A I H A I G K A S A G R G I Y E G P G I S I K L S A L H P R Y S R A Q A A R V M G E L L P R V K A L A L L A K N Y D I G L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
G G G S
T T
S G G G T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence I D A E E A D R L E L S L D L L E V L C L D G D L S G W N G M G F V V Q A Y G K R C P F V L D F I I D L A R R S G R R I M V R L V K G A Y W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T
G G G T T
T T B T T T
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence D A E I K R A Q L D G L A D F P V F T R K I H T D V S Y I A C A A K L L A A T D V V F P Q F A T H N A Q T L A A I Y H V G K Y E F Q C L H G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S B
S S T T T T T
S
T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence M G E P L Y E E V V G R G K L D R P C R I Y A P V G T H E T L L A Y L V R R L L E N G A N S S F V H R I N D P K V S I D E L I A D P V E V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T T S S T T T T
S T T
S
T T
T T
T T S
T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence R A M P V V G A K H D R I A L P A E L F G D A R T N S A G L D L S N E E T L A S L T E A L R E S A A M K W T A L P Q L A T G P A A G E T R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S T T
T T S
G G G T T G G G
T T
T S
T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence V L N P G D H R D V V G S V T E T S E E D A R R A V R L A A D A A P D W A A V P P S E R A A C L D R A A E L M Q A R M P T L L G L I I R E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T S
T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence G K S A L N A I A E V R E A I D F L R Y Y A E Q T R R T L G P G H G P L G P I V C I S P W N F P L A I F T G Q I A A A L V A G N P V L A K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
B
S
S S S T T T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence A E E T P L I A A E G V R I L R E A G I P A S A L Q L L P G D G R V G A A L V A A A E T A G V M F T G S T E V A R L I Q A Q L A D R L S P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
G G G
S
T T
S
T T
T T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence G R P I P L I A E T G G Q N A M I V D S S A L A E Q V V G D V I T S A F D S A G Q R C S A L R V L C L Q E D V A D R I L T M L K G A L H E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
G G G G
S T T
T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence H I G R T D R L S V D V G P V I T S E A K D N I E K H I E R M R G L G R K V E Q I G L A S E T G V G T F V P P T I I E L E K L S D L Q R E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S
S S S T T
B
S
T T
G G G G G S
S S G G G
S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence F G P V L H V I R Y R R D D L D R L V D D V N A T G Y G L T F G L H T R L D E T I A H V T S R I K A G N L Y I N R N I I G A V V G V Q P F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G T T S
S
S B
S S S
S
T T T S
B

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence G R G L S G T G P K A G G P L Y L G R L V T T A P V P P Q H S S V H T D P V L L D F A K W L D G K G A R A E A E A A R N A G S S S A L G L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G B
S
B T S T T T G G G G B S S
T T
S
T T
T T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence L E L P G P V G E R N L Y T L H A R G R I L L V P A T E S G L Y H Q L A A A L A T G N S V A I D A A S G L Q A S L K N L P Q T V G L R V S W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S T T
G G G
G G G G T T
T T

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence S K D W A A D G P F A G A L V E G D A E R I R A V N K A I A A L P G P L L L V Q A A S S G E I A R N P D A Y C L N W L V E E V S A S I N T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S
T S S S S
T T S S
G G G S T T

. . . . . . . . . 1200

Sequence A A G G N A S L M A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	P	A	P	F	A	D	F	A	P	P	V	R	P	Q	S	T	L	R	R	A	I	T	A	A	Y	R	R	P	E	T	E	C	L	P	P	L	V	E	A	A	T	Q	S	K	E	I	R	D	A	A	A	S	T	A	R	K	L	I	E	A	L	R	G	K	G	V	E	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T	T	S				S	S												T	T	T																																					T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	Q	E	Y	S	L	S	S	Q	E	G	V	A	L	M	C	L	A	E	A	L	L	R	I	P	D	T	A	T	R	D	A	L	I	R	D	K	I	A	D	G	N	W	R	S	L	F	V	N	A	A	T	W	G	L	V	V	T	G	K	L	T	S	T	V	N	D	R	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T																	T	T														T	G	G	G	S					T	T	T	T										S				S	S	B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	A	A	L	T	R	L	I	S	R	C	G	E	P	V	I	R	R	G	V	D	M	A	M	R	M	M	G	E	Q	F	V	T	G	E	T	I	R	E	A	L	K	R	S	K	E	L	E	E	K	G	F	S	Y	S	Y	D	M	L	G	E	A	A	T	T	A	A	D	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																														T	S		S	B	S	S															T								S						S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	Y	Y	R	D	Y	E	S	A	I	H	A	I	G	K	A	S	A	G	R	G	I	Y	E	G	P	G	I	S	I	K	L	S	A	L	H	P	R	Y	S	R	A	Q	A	A	R	V	M	G	E	L	L	P	R	V	K	A	L	A	L	L	A	K	N	Y	D	I	G	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T						S							G	G	G	S		T	T		S	G	G	G																							T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	I	D	A	E	E	A	D	R	L	E	L	S	L	D	L	L	E	V	L	C	L	D	G	D	L	S	G	W	N	G	M	G	F	V	V	Q	A	Y	G	K	R	C	P	F	V	L	D	F	I	I	D	L	A	R	R	S	G	R	R	I	M	V	R	L	V	K	G	A	Y	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G													T		G	G	G	T	T										T	T	B	T	T																T											S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	D	A	E	I	K	R	A	Q	L	D	G	L	A	D	F	P	V	F	T	R	K	I	H	T	D	V	S	Y	I	A	C	A	A	K	L	L	A	A	T	D	V	V	F	P	Q	F	A	T	H	N	A	Q	T	L	A	A	I	Y	H	V	G	K	Y	E	F	Q	C	L	H	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T		S	S		S	B		S	S																	T	T	T	T	T																					S							T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	M	G	E	P	L	Y	E	E	V	V	G	R	G	K	L	D	R	P	C	R	I	Y	A	P	V	G	T	H	E	T	L	L	A	Y	L	V	R	R	L	L	E	N	G	A	N	S	S	F	V	H	R	I	N	D	P	K	V	S	I	D	E	L	I	A	D	P	V	E	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S					T	T	T	S	S	T	T	T	T													S	T	T		S													T	T						T	T		T	T	S						T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	R	A	M	P	V	V	G	A	K	H	D	R	I	A	L	P	A	E	L	F	G	D	A	R	T	N	S	A	G	L	D	L	S	N	E	E	T	L	A	S	L	T	E	A	L	R	E	S	A	A	M	K	W	T	A	L	P	Q	L	A	T	G	P	A	A	G	E	T	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	S	S	S	T	T				T	T	S			G	G	G	T	T	G	G	G									T	T																	T	S									T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	V	L	N	P	G	D	H	R	D	V	V	G	S	V	T	E	T	S	E	E	D	A	R	R	A	V	R	L	A	A	D	A	A	P	D	W	A	A	V	P	P	S	E	R	A	A	C	L	D	R	A	A	E	L	M	Q	A	R	M	P	T	L	L	G	L	I	I	R	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T																																	T	S																			T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	G	K	S	A	L	N	A	I	A	E	V	R	E	A	I	D	F	L	R	Y	Y	A	E	Q	T	R	R	T	L	G	P	G	H	G	P	L	G	P	I	V	C	I	S	P	W	N	F	P	L	A	I	F	T	G	Q	I	A	A	A	L	V	A	G	N	P	V	L	A	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																															T	T	S		B		S								S	S	S	T	T													T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	A	E	E	T	P	L	I	A	A	E	G	V	R	I	L	R	E	A	G	I	P	A	S	A	L	Q	L	L	P	G	D	G	R	V	G	A	A	L	V	A	A	A	E	T	A	G	V	M	F	T	G	S	T	E	V	A	R	L	I	Q	A	Q	L	A	D	R	L	S	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T															T	T			G	G	G							S											T	T								S													T	T				T	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	G	R	P	I	P	L	I	A	E	T	G	G	Q	N	A	M	I	V	D	S	S	A	L	A	E	Q	V	V	G	D	V	I	T	S	A	F	D	S	A	G	Q	R	C	S	A	L	R	V	L	C	L	Q	E	D	V	A	D	R	I	L	T	M	L	K	G	A	L	H	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																			T	T	S															G	G	G	G		S	T	T																								T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	H	I	G	R	T	D	R	L	S	V	D	V	G	P	V	I	T	S	E	A	K	D	N	I	E	K	H	I	E	R	M	R	G	L	G	R	K	V	E	Q	I	G	L	A	S	E	T	G	V	G	T	F	V	P	P	T	I	I	E	L	E	K	L	S	D	L	Q	R	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B	S		S	S	S	T	T			B				S																		T	T										G	G	G	G	G	S											S	S	G	G	G			S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	F	G	P	V	L	H	V	I	R	Y	R	R	D	D	L	D	R	L	V	D	D	V	N	A	T	G	Y	G	L	T	F	G	L	H	T	R	L	D	E	T	I	A	H	V	T	S	R	I	K	A	G	N	L	Y	I	N	R	N	I	I	G	A	V	V	G	V	Q	P	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S									G	G	G										T	T	S			S							S	B														S					S	S		S					T	T	T	S		B
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	G	R	G	L	S	G	T	G	P	K	A	G	G	P	L	Y	L	G	R	L	V	T	T	A	P	V	P	P	Q	H	S	S	V	H	T	D	P	V	L	L	D	F	A	K	W	L	D	G	K	G	A	R	A	E	A	E	A	A	R	N	A	G	S	S	S	A	L	G	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	G	G	G	B		S			B	T	S	T	T	T	G	G	G	G	B	S	S					T	T				S																T	T																	T	T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	L	E	L	P	G	P	V	G	E	R	N	L	Y	T	L	H	A	R	G	R	I	L	L	V	P	A	T	E	S	G	L	Y	H	Q	L	A	A	A	L	A	T	G	N	S	V	A	I	D	A	A	S	G	L	Q	A	S	L	K	N	L	P	Q	T	V	G	L	R	V	S	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T											S							S	S														T	T							G	G	G			G	G	G	G	T	T							T	T
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	S	K	D	W	A	A	D	G	P	F	A	G	A	L	V	E	G	D	A	E	R	I	R	A	V	N	K	A	I	A	A	L	P	G	P	L	L	L	V	Q	A	A	S	S	G	E	I	A	R	N	P	D	A	Y	C	L	N	W	L	V	E	E	V	S	A	S	I	N	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S									S						S														T	S	S	S	S																T	T	S	S		G	G	G	S										T	T
	.	.	.	.	.	.	.	.	.	1200
Sequence	A	A	G	G	N	A	S	L	M	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	S