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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5k1sD_

Fold library idPDB HeaderMoleculeTitle
c5k1sD_2.55PDB header: oxidoreductaseChain: D: PDB Molecule: oxidoreductase, zinc-binding dehydrogenase family;


Added to library: Thu Feb 9 13:45:53 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GHMKAVVLRSFGGNLKMETMPMPRPGRGEVLLRVHACGVCYHDVINRRGLGHEAAGEVIEVGPDTPGWKT
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Known secondary structure (DSSP)

SS









TT
T


S
SS
TT

T
 .........80.........90.........100.........110.........120.........130.........140
Sequence GDRAATLQRMSCGDCALCRSGRNSLCKTDNRFFGEELPGGYAQFMVAPVGGLGRVPASLPWNEAATVCCT
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Known secondary structure (DSSP) T

SB


SSST
GGG

TT

BBTTTB

SSBSGGG

TTS
TSTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TGTAVHTVRTRGKVRAGETVLITGASGGVGLSSVQLARLDGARVIAVTSSEAKVQALKEAGADEVIVSRG
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Known secondary structure (DSSP) TTTT


TT
TTTSTT
S
GGGT
S
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LDFASDVRKRTQGAGVDVAVEIVGSATFDQTLKSMAPGGRVVVVGNLESGMVQLNPGLVIVKELEILGAY
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Known secondary structure (DSSP) SSTTT

TTSS
S
TTS





TT


 .........290.........300.........310.........320.........330...
Sequence ATTQAELDEALRLTATGGVRQFVTDAVPLAEAAKAHFRLENREVAGRLVLVPP
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Known secondary structure (DSSP)


TSS


GGGTT

SS


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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