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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5k1rB_

Fold library idPDB HeaderMoleculeTitle
c5k1rB_2.10PDB header: lyaseChain: B: PDB Molecule: burkholderia pseudomallei sphingosine-1-phosphate lyase


Added to library: Thu Feb 9 20:53:50 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LYPYAAEFGALHEFPERGMPRERLLEELRSMAVREDRKWESGRCSGTMYCGDHEHYAFLNEAYGLFSHVN
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Known secondary structure (DSSP)

TT



S

SS


TS
BTTS
SS

TTTT
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence ALQRDLCPSMNRMESEIVAMTVALLHGEAVQRHDGAHRACGALSLGGTESILNATLAYREKARAERGIER
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Known secondary structure (DSSP) TTSGGG
TTTSS


SS

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PRMIWPASAHPAFRKAAHLFGFDVTVAPIDPVTMQVDADFVRDAVDANTVMLVGSACNYPYGTIDPIGAL
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Known secondary structure (DSSP)
TTS
T

B
TTT

B


TTBS
TTT

B

 .........220.........230.........240.........250.........260.........270.........280
Sequence SAIAVEKDVWLHVDGCLGGWMLPWGEALGYPDIPAFDFRLPGVTSISADTHKFGYGPKGGSVLAWRDASF
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Known secondary structure (DSSP) TT

TTTTTTTT
SS



STTSTT


TTTTT


SS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence RRHQYFLMTDWVGGVYGSPGLTGSRSGGLIAATWAALRSLGREGYLARAKAIFETAFDMQAAVRAIPELR
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Known secondary structure (DSSP) GGG
SS
TT

SSS

S
BSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VLGKPTFCFAFTSDAFDIYHVNDFMRQRGWRFNGLQHPDALHMCVTGPQTQPGVAERFRQDLGEAVEHAR
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Known secondary structure (DSSP)
SS
SSSSS
TT
B
TTTT

GGGGSTT
 .........430.........440
Sequence HDARARAFFTQVLDLFTDCP
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Known secondary structure (DSSP)

TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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