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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5k0uA_

Fold library idPDB HeaderMoleculeTitle
c5k0uA_2.79PDB header: virusChain: A: PDB Molecule: capsid protein vp1;


Added to library: Sat Jul 16 08:16:44 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VLVVPDTKPSGPQHTTKPSILGAMEIGASSNATPESTIETRYVYNTNTNAEADVEMFLGRSALWGKVTLT
Predicted secondary structure


















































SS confidence





































































Known secondary structure (DSSP)

B


B







SS
SS


GGGS





S



B



B
GGGS
S

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence RQYAKWEINFQEQAHIRKKFEFFTYLRFDMEVTIVTNNKGLMQIMFVPPGIDHPETHDDRKWDSASNPSV
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SS confidence





































































Known secondary structure (DSSP) SS

STT
TTBS


S

TTS



STT
GGGS
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence FFQPKSGFPRFTIPFTGLASAYYMFYDGYDKPKGSDNNEYGIAPTNDMGLLCFRTLDNSGGNDVKIYVKP
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Known secondary structure (DSSP)
SSS






SSSSS


SBSS
TT
TT

BSSTTT



SS

S

 .........220.........230.........240.........250.........260...
Sequence KHITAWVPRPPRATQYTHKYSTNYHYKPNSSGPDEHVLKDRHFIKTRPLISSA
Predicted secondary structure




























SS confidence




















































Known secondary structure (DSSP)

B




B


STTT



B


SSSTTTT

B

B




S
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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