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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5jzgC_

Fold library idPDB HeaderMoleculeTitle
c5jzgC_3.16PDB header: virusChain: C: PDB Molecule: capsid protein vp0;


Added to library: Sat Jul 16 08:15:47 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GAQVSSVIKYFNINYYKDSASSGLSRQDFSQDPSTLTNPALMSPSVEACGYSDRQITIGNSTITTSLHTV
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SSSSSSSS






SS






TTSS


SSSS
STT

TT



S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LAYGEWPTYLSDIDATSVDKPTHPETSADRFYTLDSVEWQVGSHGWWWKLPDALKDMGVFGQNMYYHSMG
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Known secondary structure (DSSP) GGG






SSS
S

S

B

GGGTSS




TT


TGGGTTSTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence RSGFIIHTQCNATKFHSGALIVAVIPEHQLAYVGGVKVNVGYDHTHPGQSGHQIRGPSQSNDRSGGKPDE
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TT
T



BSSSS




TTTS


TT





TTS


SS
B

 .........220.........230.........240.........250.........260.........270.........280
Sequence DPLFNCNGTLLGNITIFPHQIINLRTNNSSTIVVPYINCVPMDNMLKHNNLSLVIIPLVPLRPGSSGINS
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Known secondary structure (DSSP)
TTTTTTT

TTSGGGSSTTT
S



SSS
B
SSS




SS



 .........290.........300...
Sequence VPITVTIAPYKSEFSGAMEAQRQ
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Known secondary structure (DSSP)
S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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