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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5juyB_

Fold library idPDB HeaderMoleculeTitle
c5juyB_4.10PDB header: apoptosisChain: B: PDB Molecule: apoptotic protease-activating factor 1;


Added to library: Fri Feb 10 01:50:08 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVS
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Known secondary structure (DSSP)

T

GGGTTTSS
TSSSTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence FYNALLHEGYKDLAALLHDGIPVVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGW
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Known secondary structure (DSSP) TT
TT







TTTTT




SS



T
SSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLN
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Known secondary structure (DSSP)
STTSS
TTTT

TT


S


SS

S
S



S
 .........220.........230.........240.........250.........260.........270.........280
Sequence IEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE
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Known secondary structure (DSSP) TS
S




T
SS
S
SSTTTT

S


B







 .........290.........300.........310.........320.........330.........340.........350
Sequence KGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSY
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Known secondary structure (DSSP) T

GGGS
TTT
SS

TTS


TT



SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRN
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Known secondary structure (DSSP) SSSSTS
TTTGGGG

TT

B
STS
TTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence GKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKE
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Known secondary structure (DSSP) SSS



TTSBTTB

TTSSSTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence LCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLNGHLLGRQPFPNIVQLGLC
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Known secondary structure (DSSP) S
T
TTTS
TTTTTSSS


TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence EPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTL
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Known secondary structure (DSSP) S
TTSS
SSTT


B
SGGGTSS


S


SS


B
TTS
TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence QVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTN
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Known secondary structure (DSSP) SSS



SS



SSSSTTS
TTT
S


SS







S
 .........710.........720.........730.........740.........750.........760.........770
Sequence SSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERK
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Known secondary structure (DSSP) SSS


TTS
TTSSS


SS

S
SSTT
TTSTTT
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence SINVKQFFLNEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHL
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Known secondary structure (DSSP)


S









TTSS
TT
TTT
S

STT




SSTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence AVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQ
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Known secondary structure (DSSP)
SSS
TTT
S


SS
TTTTTTS
T





 .........920.........930.........940.........950.........960.........970.........980
Sequence EVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR
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Known secondary structure (DSSP) TTSSSS
TTS



S

S
TTSS
TTSSSS
TT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence IFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFD
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Known secondary structure (DSSP)




S


SSS
SSSSTTTT

SS



SSS

TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence GTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSA
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Known secondary structure (DSSP) S

SSS






SSS


SS
SSS
SS

SSSSS
S
S

S


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence FSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNV
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Known secondary structure (DSSP)
TTT


TT



SSSS






S
TT


SS







SSSSSSSS
 .........1200.........1210.........1220.........1230....
Sequence VTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE
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Known secondary structure (DSSP) SSS
SB

S

SSS





TTSSS
TT

B



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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