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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5jsdB_

Fold library idPDB HeaderMoleculeTitle
c5jsdB_1.48PDB header: viral proteinChain: B: PDB Molecule: phiab6 tailspike;


Added to library: Tue Mar 14 09:59:19 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QTQYYLKYFNPEIVYPKNARIMLDNGDIVRSTVVNNTSNPNVDMTGWVKVSSVSQIFDETYNITQSVING
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Known secondary structure (DSSP)

SS


B

TT

B
TT

TTS

SSSB


TTT

TTTTSGGG
TTTTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence NLITVDNFGAKGDGVTDDSAAFQAYCDSALTGQNLYLGAKGRYILKNQVDLKGKGLVGNGCGKVSEFYYN
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Known secondary structure (DSSP) S


GGGGT




SS

S

SS
S

TT

S



SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LGCIDVDGSSPDLQGKTAFINCGPTIQNLTARCSNGAGKQVSFIEIDGYLANIDHITLINFYNQIVVKQA
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Known secondary structure (DSSP) TT
GGGTTS
SS
TTS

S
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence LVGFNFTNAWLYYSQNAGIYCEDPLNRVSTTGTFHNIYFQLGDGHAMIFDRDVHGCDFDNIIFESMNGGI
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Known secondary structure (DSSP)

SS

TT


SS
SSSSS
S

 .........290.........300.........310.........320.........330.........340.........350
Sequence KARTVAHCGFGKFWCENLKTATSKDWLEVTGANSCYGNSFTGYVKLLGGWTSKTSPTLDSLPTNNYGGVS
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Known secondary structure (DSSP) SS


SS
S
S
STT
S
S
TT
S

TTS


SS



 .........360.........370.........380.........390.........400.........410.........420
Sequence VSAEGISIVNAGNKAKMLMLPSGFKTGNATIDETHISSSTVTPLVKRRVIGADSSGAQYLASDTYTKLSR
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Known secondary structure (DSSP) TT
TTSS
TTSSS





SSSS







TTS

SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence KWGTYNHGSNNAGAFYAPMMLTYDQSFSTPQNNNGWKIVKESTGVYRVERVSGNTSVITNGHIVVGSPLM
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Known secondary structure (DSSP) TTTT

TT
SS

TTTT
TT



S




 .........500.........510.........520.........530.........540........
Sequence GSRLGTGTGATHGIQMIETYAGSWTSYTEAAGFKVFWRDSSNALVDPHRFTVAFTATS
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Known secondary structure (DSSP) SSSS

S



SSTT
S
TTS
B


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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