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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5jirB_

Fold library idPDB HeaderMoleculeTitle
c5jirB_1.70PDB header: unknown functionChain: B: PDB Molecule: oop family ompa-ompf porin;


Added to library: Thu Feb 9 13:27:11 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DAVHTDAVQDWKNGTINAQLTLDLARARMRLPADRTAASQFLRYKAPAQLKDVYLSVLVDSQNRVGDCLA
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Known secondary structure (DSSP)

TTTTTTTTT

TTTTTSB
SSS
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence HEKIRLADITALVDAGHHAVTTLSPSVRSLQLSHQTPLTALARLFVTHETAYVSRPYTGILIDARGSLPV
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Known secondary structure (DSSP) TTSS
TT


TTS
S
SSSSSGGG


SS






S

S
B
 .........150.........160.........170.........180.........190.........200.........210
Sequence HGEYVSEPLSACLFPKIWSTDMDLIYEKNMVHPDRAKAWGVVRYGSVWDEKMYRDRIGTTPLKIIARGVF
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Known secondary structure (DSSP) TTSS





SS

TT


GGGS

S

GGG




SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence GQQRTDPIIASKDAAQILARPENLRLLAEGNVIILCDEAALRVHVPYPLVDEHFYFAYHDVKRFLTDERS
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Known secondary structure (DSSP) TTTT

T
T




SS


T
 .........290.........300.........310.........320.........330.........340.........350
Sequence PGVGVRSGINTLKITVYDVRFVANSPEILASEKDRVDVIATALKKMGPYTRFLIEGHTADLHRPQEEAAL
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Known secondary structure (DSSP) TT
SS
S



TTS
S

TT
SS




S
 .........360.........370.........380.........390.........400.....
Sequence SVARAQRMAQELSRRGIEMTRITTAGHGATKPIAPSDTHANKAKNRRVEITILRD
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Known secondary structure (DSSP) TTT

GGG
TTSS
SS
SSSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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